Evidence map›Paper›PMID 26165942›Full record

ArticleCell2015

Chromosomal Arrangement of Phosphorelay Genes Couples Sporulation and DNA Replication.

Jatin Narula, Anna Kuchina, Dong-Yeon D Lee, Masaya Fujita, Gürol M Süel, Oleg A Igoshin

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
8.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 87 citations in OpenAlex.

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  13. Real-time detection of response regulator phosphorylation dynamics in live bacteria.Proceedings of the National Academy of Sciences of the United States of America · 2022
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  15. Bacteriophage self-counting in the presence of viral replication.Proceedings of the National Academy of Sciences of the United States of America · 2021
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  16. Article
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  18. Artificial Sporulation Induction (ASI) byInternational journal of molecular sciences · 2020
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Jatin NarulaDepartment of Bioengineering and Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA.
Anna KuchinaDivision of Biological Sciences, UCSD, San Diego, CA 92093, USA.
Dong-Yeon D LeeDivision of Biological Sciences, UCSD, San Diego, CA 92093, USA.
Masaya FujitaDepartment of Biology and Biochemistry, University of Houston, Houston, TX 77204, USA.
Gürol M SüelDivision of Biological Sciences, UCSD, San Diego, CA 92093, USA. Electronic address: gsuel@ucsd.edu.
Oleg A IgoshinDepartment of Bioengineering and Center for Theoretical Biological Physics, Rice University, Houston, TX 77005, USA. Electronic address: igoshin@rice.edu.
University of California, San Diego · USCenter for Theoretical Biological Physics · USRice University · USUniversity of Houston · US

Funding

Regulation of pluripotent differentiation by gene circuit interactions.R01GM088428 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI SUEL, GUROL MEHMET · 2009 to 2013
$1.4M
Howard Hughes Medical InstituteNIGMS NIH HHS R01 GM088428
6 · The paper itself

Abstract

Genes encoding proteins in a common regulatory network are frequently located close to one another on the chromosome to facilitate co-regulation or couple gene expression to growth rate. Contrasting with these observations, here, we demonstrate a functional role for the arrangement of Bacillus subtilis sporulation network genes on opposite sides of the chromosome. We show that the arrangement of two sporulation network genes, one located close to the origin and the other close to the terminus, leads to a transient gene dosage imbalance during chromosome replication. This imbalance is detected by the sporulation network to produce cell-cycle coordinated pulses of the sporulation master regulator Spo0A∼P. This pulsed response allows cells to decide between sporulation and continued vegetative growth during each cell cycle spent in starvation. The simplicity of this coordination mechanism suggests that it may be widely applicable in a variety of gene regulatory and stress-response settings. VIDEO ABSTRACT.

Indexed as

Bacillus subtilisBacterial ProteinsChromosomes, BacterialDNA ReplicationFeedbackGene DosagePhosphorylationSpores, BacterialTranscription FactorsBacterial ProteinsSpo0A protein, Bacillus subtilisTranscription Factors

Identifiers

PMID26165942
PMCPMC4506695
OpenAlexW1520151308

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.