Evidence map›Paper›PMID 26164366›Full record

ArticleOncotarget2015

Genome-wide pharmacologic unmasking identifies tumor suppressive microRNAs in multiple myeloma.

Chonglei Bi, Tae-Hoon Chung, Gaofeng Huang, Jianbiao Zhou, Junli Yan, Gregory J Ahmann, Rafael Fonseca, Wee Joo Chng

Open access · diamondAbstract read
In one paragraph

Article in Oncotarget, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 2 pooled it
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 2 syntheses or guidelines pooled it, 51 citations in OpenAlex.

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  17. Medicines (Basel, Switzerland) · 2018
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Chonglei BiExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Tae-Hoon ChungExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Gaofeng HuangExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Jianbiao ZhouExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Junli YanExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Gregory J AhmannMayo Clinic, Scottsdale, Arizona, USA.
Rafael FonsecaMayo Clinic, Scottsdale, Arizona, USA.
Wee Joo ChngExperimental Therapeutics, Cancer Science Institute of Singapore, Singapore.
Mayo Clinic in Arizona · USNational University of Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Epigenetic alterations have emerged as an important cause of microRNA (miRNA) deregulation. In Multiple Myeloma (MM), a few tumor suppressive miRNAs silenced by DNA hypermethylation have been reported, but so far there are few systemic investigations on epigenetically silenced miRNAs. We conducted genome-wide screening for tumor suppressive miRNAs epigenetically silenced in MM. Four Human MM Cell lines were treated with demethylating agent 5'azacytidine (5'aza). Consistently upregulated miRNAs include miR-155, miR-198, miR-135a*, miR-200c, miR-125a-3p, miR-188-5p, miR-483-5p, miR-663, and miR-630. Methylation array analysis revealed increased methylation at or near miRNA-associated CpG islands in MM patients. Ectopic restoration of miR-155, miR-198, miR-135a*, miR-200c, miR-663 and miR-483-5p significantly repressed MM cell proliferation, migration and colony formation. Furthermore, we derived a 33-gene signature from predicted miRNA target genes that were also upregulated in MM patients and associated with patient survival in three independent myeloma datasets. In summary, we have revealed important, epigenetically silenced tumor suppressive miRNAs by pharmacologic reversal of epigenetic silencing.

Indexed as

Biomarkers, TumorCell Line, TumorCell MovementCell ProliferationComputational BiologyDNA MethylationDNA Modification MethylasesEnzyme InhibitorsGene Expression ProfilingGene Expression Regulation, NeoplasticGene SilencingGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansMicroRNAsMultiple MyelomaBiomarkers, TumorDNA Modification MethylasesEnzyme InhibitorsMicroRNAsepigeneticsmicroRNAmyelomatumor suppressor

Identifiers

PMID26164366
PMCPMC4694918
OpenAlexW1677557982

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.