Evidence map›Paper›PMID 26164235›Full record

ArticleBiochemical and biophysical research communications2015

The actin family protein ARP6 contributes to the structure and the function of the nucleolus.

Hiroshi Kitamura, Haruka Matsumori, Alzbeta Kalendova, Pavel Hozak, Ilya G Goldberg, Mitsuyoshi Nakao, Noriko Saitoh, Masahiko Harata

Abstract read
In one paragraph

Article in Biochemical and biophysical research communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

  1. Article
  2. Comparative Proteomic Analysis ofJournal of fungi (Basel, Switzerland) · 2022
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Multiple Pools of Nuclear Actin.Anatomical record (Hoboken, N.J. : 2007) · 2018
    Article
  8. Nucleolus and chromatin.Histochemistry and cell biology · 2018
    Review
  9. Review
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Hiroshi KitamuraLaboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi 1-1, Aoka-ku, Sendai 981-8555, Japan.
Haruka MatsumoriDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan.
Alzbeta KalendovaDepartment of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Academy of Sciences of the Czech Republic, v.v.i., Vídeňská 1083, 142 20 Prague, Czech Republic.
Pavel HozakDepartment of Biology of the Cell Nucleus, Institute of Molecular Genetics of the Academy of Sciences of the Czech Republic, v.v.i., Vídeňská 1083, 142 20 Prague, Czech Republic.
Ilya G GoldbergImage Informatics and Computational Biology Unit, Laboratory of Genetics, National Institute on Aging, National Institutes of Health, 251 Bayview Boulevard, Suite 100, Baltimore, MD 21224, USA.
Mitsuyoshi NakaoDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan; Core Research for Evolutional Science and Technology (CREST), Japan Science and Technology Agency, Tokyo 102-0076, Japan.
Noriko SaitohDepartment of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, 2-2-1 Honjo, Chuo-ku, Kumamoto 860-0811, Japan.
Masahiko HarataLaboratory of Molecular Biology, Graduate School of Agricultural Science, Tohoku University, Tsutsumidori-Amamiyamachi 1-1, Aoka-ku, Sendai 981-8555, Japan. Electronic address: mharata@biochem.tohoku.ac.jp.
Czech Academy of Sciences · CZKumamoto University · JPNational Institute on Aging · USTohoku University · JP

Funding

Post-transcriptional Regulation Of Proliferative and Stress Response GenesZIAAG000511 · NIA · NATIONAL INSTITUTE ON AGING · PI GOROSPE, MYRIAM · 2009 to 2025
$25.4M
Quantitative morphology of induced phenotypes in cultured cells and tissuesZIAAG000674 · NIA · NATIONAL INSTITUTE ON AGING · PI GOLDBERG, ILYA · 2012 to 2016
$1.9M
Intramural NIH HHS Z99 AG999999Intramural NIH HHS ZIA AG000511
6 · The paper itself

Abstract

The actin family members, consisting of actin and actin-related proteins (ARPs), are essential components of chromatin remodeling complexes. ARP6, one of the nuclear ARPs, is part of the Snf-2-related CREB-binding protein activator protein (SRCAP) chromatin remodeling complex, which promotes the deposition of the histone variant H2A.Z into the chromatin. In this study, we showed that ARP6 influences the structure and the function of the nucleolus. ARP6 is localized in the central region of the nucleolus, and its knockdown induced a morphological change in the nucleolus. We also found that in the presence of high concentrations of glucose ARP6 contributed to the maintenance of active ribosomal DNA (rDNA) transcription by placing H2A.Z into the chromatin. In contrast, under starvation, ARP6 was required for cell survival through the repression of rDNA transcription independently of H2A.Z. These findings reveal novel pleiotropic roles for the actin family in nuclear organization and metabolic homeostasis.

Indexed as

ActinsAdenosine TriphosphatasesCell NucleolusChromosomal Proteins, Non-HistoneDNA, RibosomalGlucoseHeLa CellsHumansTranscription, GeneticActinsACTR6 protein, humanAdenosine TriphosphatasesChromosomal Proteins, Non-HistoneDNA, RibosomalGlucoseSRCAP protein, humanActin-related proteinARP6Histone H2A.ZNucleolusWndchrm

Identifiers

PMID26164235
PMCPMC5920680
OpenAlexW776625374

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.