Evidence map›Paper›PMID 26164008›Full record

ArticleBiosensors & bioelectronics2015

A portable, shock-proof, surface-heated droplet PCR system for Escherichia coli detection.

Scott V Angus, Soohee Cho, Dustin K Harshman, Jae-Young Song, Jeong-Yeol Yoon

Abstract read
In one paragraph

Article in Biosensors & bioelectronics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
3.4field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 45 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Scott V AngusDepartment of Agricultural and Biosystems Engineering, The University of Arizona, Tucson, AZ 85721, USA.
Soohee ChoDepartment of Agricultural and Biosystems Engineering, The University of Arizona, Tucson, AZ 85721, USA.
Dustin K HarshmanBiomedical Engineering Graduate Interdisciplinary Program, The University of Arizona, Tucson, AZ 85721, USA.
Jae-Young SongViral Disease Division, Animal and Plant Quarantine Agency, Anyang-si, Gyeonggi-do 430-757, Republic of Korea.
Jeong-Yeol YoonDepartment of Agricultural and Biosystems Engineering, The University of Arizona, Tucson, AZ 85721, USA; Biomedical Engineering Graduate Interdisciplinary Program, The University of Arizona, Tucson, AZ 85721, USA. Electronic address: jyyoon@email.arizona.edu.
University of Arizona · USAnimal and Plant Quarantine Agency · KR

Funding

Cardiovascular Biomedical Engineering Training GrantT32HL007955 · NHLBI · UNIVERSITY OF ARIZONA · PI BARTON, JENNIFER KEHLET · 2001 to 2020
$5.1M
NHLBI NIH HHS T32 HL007955NHLBI NIH HHS T32HL007955
6 · The paper itself

Abstract

A novel polymerase chain reaction (PCR) device was developed that uses wire-guided droplet manipulation (WDM) to guide a droplet over three different heating chambers. After PCR amplification, end-point detection is achieved using a smartphone-based fluorescence microscope. The device was tested for identification of the 16S rRNA gene V3 hypervariable region from Escherichia coli genomic DNA. The lower limit of detection was 10(3) genome copies per sample. The device is portable with smartphone-based end-point detection and provides the assay results quickly (15 min for a 30-cycle amplification) and accurately. The system is also shock and vibration resistant, due to the multiple points of contact between the droplet and the thermocouple and the Teflon film on the heater surfaces. The thermocouple also provides real-time droplet temperature feedback to ensure it reaches the set temperature before moving to the next chamber/step in PCR. The device is equipped to use either silicone oil or coconut oil. Coconut oil provides additional portability and ease of transportation by eliminating spilling because its high melting temperature means it is solid at room temperature.

Indexed as

Biosensing TechniquesDNA, BacterialEquipment DesignEquipment Failure AnalysisEscherichia coliHot TemperatureMiniaturizationPolymerase Chain ReactionSequence Analysis, DNASmartphoneSystems IntegrationThermographyUser-Computer InterfaceDNA, Bacterial16S rRNACoconut oilContact anglePolymerase chain reactionSmartphone

Identifiers

PMID26164008
PMCPMC4549193
OpenAlexW806483218

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.