Evidence map›Paper›PMID 26163422›Full record

ArticleG3 (Bethesda, Md.)2015

Genetic Regulation of Dna2 Localization During the DNA Damage Response.

Askar Yimit, Michael Riffle, Grant W Brown

Open access · goldAbstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Askar YimitDepartment of Biochemistry and Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada.
Michael RiffleDepartment of Biochemistry, University of Washington, Seattle, Washington 98195.
Grant W BrownDepartment of Biochemistry and Donnelly Centre, University of Toronto, Toronto, ON M5S 3E1, Canada grant.brown@utoronto.ca.ORCID http://orcid.org/0000-0002-9002-5003
University of Toronto · CAUniversity of Washington · US

Funding

TrainingP41GM103533 · NIGMS · UNIVERSITY OF WASHINGTON · PI YATES III, JOHN R · 2012 to 2021
$20.7M
NIGMS NIH HHS P41 GM103533
6 · The paper itself

Abstract

DNA damage response pathways are crucial for protecting genome stability in all eukaryotes. Saccharomyces cerevisiae Dna2 has both helicase and nuclease activities that are essential for Okazaki fragment maturation, and Dna2 is involved in long-range DNA end resection at double-strand breaks. Dna2 forms nuclear foci in response to DNA replication stress and to double-strand breaks. We find that Dna2-GFP focus formation occurs mainly during S phase in unperturbed cells. Dna2 colocalizes in nuclear foci with 25 DNA repair proteins that define recombination repair centers in response to phleomycin-induced DNA damage. To systematically identify genes that affect Dna2 focus formation, we crossed Dna2-GFP into 4293 nonessential gene deletion mutants and assessed Dna2-GFP nuclear focus formation after phleomycin treatment. We identified 37 gene deletions that affect Dna2-GFP focus formation, 12 with fewer foci and 25 with increased foci. Together these data comprise a useful resource for understanding Dna2 regulation in response to DNA damage.

Indexed as

DNA DamageGene Expression Regulation, FungalDNA Breaks, Double-StrandedDNA HelicasesDNA RepairG2 PhaseGenomic InstabilityProtein BindingProtein Interaction MappingProtein Interaction MapsProtein TransportRad52 DNA Repair and Recombination ProteinRecombinant Fusion ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsS PhaseDNA2 protein, S cerevisiaeDNA HelicasesRad52 DNA Repair and Recombination ProteinRecombinant Fusion ProteinsSaccharomyces cerevisiae ProteinscolocalizationDna2 fociDNA damageDNA repairdouble-strand breaksgeneticsgenome stabilitynuclear fociSaccharomyces cerevisiae

Identifiers

PMID26163422
PMCPMC4555230
OpenAlexW2099901125

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.