Evidence map›Paper›PMID 26163317›Full record

ArticleEukaryotic cell2015

Activation of Autophagy by Metals in Chlamydomonas reinhardtii.

Marta Pérez-Martín, Crysten E Blaby-Haas, María Esther Pérez-Pérez, Ascensión Andrés-Garrido, Ian K Blaby, Sabeeha S Merchant, José L Crespo

Open access · diamondAbstract read
In one paragraph

Article in Eukaryotic cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Evolutionary conservation and metabolic significance of autophagy in algae.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2024
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  11. Understanding and exploiting the roles of autophagy in plants through multi-omics approaches.Plant science : an international journal of experimental plant biology · 2018
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Marta Pérez-MartínInstituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Seville, Spain.
Crysten E Blaby-HaasDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California, USA.
María Esther Pérez-PérezInstituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Seville, Spain.
Ascensión Andrés-GarridoInstituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Seville, Spain.
Ian K BlabyDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California, USA.
Sabeeha S MerchantDepartment of Chemistry and Biochemistry, University of California, Los Angeles, California, USA Institute for Genomics and Proteomics, University of California, Los Angeles, California, USA.
José L CrespoInstituto de Bioquímica Vegetal y Fotosíntesis, Consejo Superior de Investigaciones Científicas (CSIC)-Universidad de Sevilla, Seville, Spain crespo@ibvf.csic.es.
University of California, Los Angeles · USConsejo Superior de Investigaciones Científicas · ESInstituto de Bioquímica Vegetal y Fotosíntesis · ES

Funding

Nutritional Cu Signaling and HomeostasisR01GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI SABEEHA MERCHANT · 1995 to 2026
$4.6M
Nutritional Copper Signaling and HomeostasisR37GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2020
$4.3M
Training in Molecular ToxicologyT32ES015457 · NIEHS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ALLARD, PATRICK, HANKINSON, OLIVER NMN · 2008 to 2025
$4.0M
Transcriptional profiling and annotation of the Chlamydomonas genomeR24GM092473 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 2011 to 2014
$1.2M
Dissection of the Molecular Details of Fe Deficiency AcclimationF32GM100753 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI BLABY, CRYSTEN ELIZABETH · 2012 to 2014
$156k
CU-DEPENDENT TRANSCRIPTIONAL REGULATIONR29GM042143 · NIGMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MERCHANT, SABEEHA · 1989 to 1993
–
NIEHS NIH HHS T32 ES015457NIEHS NIH HHS T32ES015457NIGMS NIH HHS F32 GM100753NIGMS NIH HHS GM100753NIGMS NIH HHS GM42143NIGMS NIH HHS R01 GM042143NIGMS NIH HHS R24 GM092473NIGMS NIH HHS R37 GM042143
6 · The paper itself

Abstract

Autophagy is an intracellular self-degradation pathway by which eukaryotic cells recycle their own material in response to specific stress conditions. Exposure to high concentrations of metals causes cell damage, although the effect of metal stress on autophagy has not been explored in photosynthetic organisms. In this study, we investigated the effect of metal excess on autophagy in the model unicellular green alga Chlamydomonas reinhardtii. We show in cells treated with nickel an upregulation of ATG8 that is independent of CRR1, a global regulator of copper signaling in Chlamydomonas. A similar effect on ATG8 was observed with copper and cobalt but not with cadmium or mercury ions. Transcriptome sequencing data revealed an increase in the abundance of the protein degradation machinery, including that responsible for autophagy, and a substantial overlap of that increased abundance with the hydrogen peroxide response in cells treated with nickel ions. Thus, our results indicate that metal stress triggers autophagy in Chlamydomonas and suggest that excess nickel may cause oxidative damage, which in turn activates degradative pathways, including autophagy, to clear impaired components and recover cellular homeostasis.

Indexed as

AutophagyCation Transport ProteinsChlamydomonas reinhardtiiMetals, HeavyOxidative StressPlant ProteinsTranscriptomeCation Transport ProteinsMetals, HeavyPlant Proteins

Identifiers

PMID26163317
PMCPMC4551596
OpenAlexW2118948727

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.