Evidence map›Paper›PMID 26163189›Full record

ArticleGenetics2015

Auxin and Tryptophan Homeostasis Are Facilitated by the ISS1/VAS1 Aromatic Aminotransferase in Arabidopsis.

Michael Pieck, Youxi Yuan, Jason Godfrey, Christopher Fisher, Sanda Zolj, Dylan Vaughan, Nicholas Thomas, Connie Wu, Julian Ramos, Norman Lee and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
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  4. Multisubstrate specificity shaped the complex evolution of the aminotransferase family across the tree of life.Proceedings of the National Academy of Sciences of the United States of America · 2024
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  13. Loss of function of theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Michael PieckDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Youxi YuanDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, Massachusetts 01003.
Jason GodfreyDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Christopher FisherDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Sanda ZoljDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Dylan VaughanDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Nicholas ThomasDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Connie WuDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Julian RamosDepartment of Biology, Boston University, Boston, Massachusetts 02215.
Norman LeeChemistry Instrumentation Center, Boston University, Boston, Massachusetts 02215.
Jennifer NormanlyDepartment of Biochemistry and Molecular Biology, University of Massachusetts, Amherst, Massachusetts 01003.
John L CelenzaDepartment of Biology, Boston University, Boston, Massachusetts 02215 celenza@bu.edu.
Boston University · USUniversity of Massachusetts Amherst · US

Funding

Regenerative Musculoskeletal Medicine Training ProgramT32AR059033 · NIAMS · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI John S Adams, Nicholas M. Bernthal · 2011 to 2026
$4.8M
NIAMS NIH HHS T32 AR059033
6 · The paper itself

Abstract

Indole-3-acetic acid (IAA) plays a critical role in regulating numerous aspects of plant growth and development. While there is much genetic support for tryptophan-dependent (Trp-D) IAA synthesis pathways, there is little genetic evidence for tryptophan-independent (Trp-I) IAA synthesis pathways. Using Arabidopsis, we identified two mutant alleles of ISS1 ( I: ndole S: evere S: ensitive) that display indole-dependent IAA overproduction phenotypes including leaf epinasty and adventitious rooting. Stable isotope labeling showed that iss1, but not WT, uses primarily Trp-I IAA synthesis when grown on indole-supplemented medium. In contrast, both iss1 and WT use primarily Trp-D IAA synthesis when grown on unsupplemented medium. iss1 seedlings produce 8-fold higher levels of IAA when grown on indole and surprisingly have a 174-fold increase in Trp. These findings indicate that the iss1 mutant's increase in Trp-I IAA synthesis is due to a loss of Trp catabolism. ISS1 was identified as At1g80360, a predicted aromatic aminotransferase, and in vitro and in vivo analysis confirmed this activity. At1g80360 was previously shown to primarily carry out the conversion of indole-3-pyruvic acid to Trp as an IAA homeostatic mechanism in young seedlings. Our results suggest that in addition to this activity, in more mature plants ISS1 has a role in Trp catabolism and possibly in the metabolism of other aromatic amino acids. We postulate that this loss of Trp catabolism impacts the use of Trp-D and/or Trp-I IAA synthesis pathways.

Indexed as

ArabidopsisArabidopsis ProteinsBiosynthetic PathwaysGene Expression Regulation, PlantIndoleacetic AcidsIndolesPlant LeavesSeedlingsTransaminasesTryptophanArabidopsis ProteinsindoleIndoleacetic AcidsIndolesTransaminasesTryptophanArabidopsis thalianaauxinISS1/VAS1phenylpropanoidstryptophan metabolism

Identifiers

PMID26163189
PMCPMC4566262
OpenAlexW2147793310

What OpenQuestion holds

Textmetadata
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.