Evidence map›Paper›PMID 26162399›Full record

ArticleAnnals of botany2015

Phenotype of Arabidopsis thaliana semi-dwarfs with deep roots and high growth rates under water-limiting conditions is independent of the GA5 loss-of-function alleles.

Luis Barboza-Barquero, Kerstin A Nagel, Marcus Jansen, Jonas R Klasen, Bernd Kastenholz, Silvia Braun, Birgit Bleise, Thorsten Brehm, Maarten Koornneef, Fabio Fiorani

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Regulation of root growth and elongation in wheat.Frontiers in plant science · 2024
    Review
  4. The unequal functional redundancy of ArabidopsisFrontiers in plant science · 2023
    Article
  5. Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Luis Barboza-BarqueroDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany, CIGRAS, Universidad de Costa Rica, San José, Costa Rica and luisorlando.barboza@ucr.ac.cr.
Kerstin A NagelIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Marcus JansenIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Jonas R KlasenDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Bernd KastenholzIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Silvia BraunIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Birgit BleiseIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Thorsten BrehmIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Maarten KoornneefDepartment of Plant Breeding and Genetics, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Fabio FioraniIBG-2: Plant Sciences, Forschungszentrum Jülich GmbH, Jülich, Germany.
Forschungszentrum Jülich · DEMax Planck Institute for Plant Breeding Research · DEUniversidad de Costa Rica · CR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BACKGROUND AND

aimsThe occurrence of Arabidopsis thaliana semi-dwarf accessions carrying inactive alleles at the gibberellin (GA) biosynthesis GA5 locus has raised the question whether there are pleiotropic effects on other traits at the root level, such as rooting depth. In addition, it is unknown whether semi-dwarfism in arabidopsis confers a growth advantage under water-limiting conditions compared with wild-type plants. The aim of this research was therefore to investigate whether semi-dwarfism has a pleiotropic effect in the root system and also whether semi-dwarfs might be more tolerant of water-limiting conditions.

methodsThe root systems of different arabidopsis semi-dwarfs and GA biosynthesis mutants were phenotyped in vitro using the GROWSCREEN-ROOT image-based software. Semi-dwarfs were phenotyped together with tall, near-related accessions. In addition, root phenotypes were investigated in soil-filled rhizotrons. Rosette growth trajectories were analysed with the GROWSCREEN-FLUORO setup based on non-invasive imaging. KEY

resultsMutations in the early steps of the GA biosynthesis pathway led to a reduction in shoot as well as root size. Depending on the genetic background, mutations at the GA5 locus yielded phenotypes characterized by decreased root length in comparison with related wild-type ones. The semi-dwarf accession Pak-3 showed the deepest root system both in vitro and in soil cultivation experiments; this comparatively deep root system, however, was independent of the ga5 loss-of-function allele, as shown by co-segregation analysis. When the accessions were grown under water-limiting conditions, semi-dwarf accessions with high growth rates were identified.

conclusionsThe observed diversity in root system growth and architecture occurs independently of semi-dwarf phenotypes, and is probably linked to a genetic background effect. The results show that there are no clear advantages of semi-dwarfism at low water availability in arabidopsis.

Indexed as

ArabidopsisGene Expression Regulation, PlantMixed Function OxygenasesMutationPlant RootsPlant ShootsWatergibberellin 3beta-hydroxylaseMixed Function OxygenasesWaterArabidopsis thalianadrought toleranceGA5gibberellin biosynthesisGROWSCREENlow water availabilityphenotypingroot systemsemi-dwarfs

Identifiers

PMID26162399
PMCPMC4549960
OpenAlexW2167551517

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.