ArticlePloS one2015
Variations in DREB1A and VP1.1 Genes Show Association with Salt Tolerance Traits in Wild Tomato (Solanum pimpinellifolium).
Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.
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Who cites it
11 citing papers in PubMed.
- Genomics Approach Links ROS-Scavenging to Enhanced Lateral Root Development Under Salt Stress in Tomato.Plant, cell & environment · 2026Article
- Insights into the Transcriptomics of Crop Wild Relatives to Unravel the Salinity Stress Adaptive Mechanisms.International journal of molecular sciences · 2023Review
- Crop Wild Relatives: A Valuable Source of Tolerance to Various Abiotic Stresses.Plants (Basel, Switzerland) · 2023Review
- A Critical Review of the Current Global Ex Situ Conservation System for Plant Agrobiodiversity. II. Strengths and Weaknesses of the Current System and Recommendations for Its Improvement.Plants (Basel, Switzerland) · 2021Review
- Plant Transcription Factors Involved in Drought and Associated Stresses.International journal of molecular sciences · 2021Review
- SlHAK20: a new player in plant salt tolerance.The EMBO journal · 2020Article
- Advances in the development and use ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2019Review
- Assessment of Genetic Differentiation and Linkage Disequilibrium inG3 (Bethesda, Md.) · 2019Article
- The Genome Sequence of the Wild TomatoFrontiers in plant science · 2018Article
- Back into the wild-Apply untapped genetic diversity of wild relatives for crop improvement.Evolutionary applications · 2017Review
- Multilevel Regulation of Abiotic Stress Responses in Plants.Frontiers in plant science · 2017Review
Corrections and comments
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Authors and funding
6 authors.
Funding
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Abstract
Association analysis was conducted in a core collection of 94 genotypes of Solanum pimpinellifolium to identify variations linked to salt tolerance traits (physiological and yield traits under salt stress) in four candidate genes viz., DREB1A, VP1.1, NHX1, and TIP. The candidate gene analysis covered a concatenated length of 4594 bp per individual and identified five SNP/Indels in DREB1A and VP1.1 genes explaining 17.0% to 25.8% phenotypic variation for various salt tolerance traits. Out of these five alleles, one at 297 bp in DREB1A had in-frame deletion of 6 bp (CTGCAT) or 12 bp (CTGCATCTGCAT), resulting in two alleles, viz., SpDREB1A_297_6 and SpDREB1A_297_12. These alleles individually or as haplotypes accounted for maximum phenotypic variance of about 25% for various salt tolerance traits. Design of markers for selection of the favorable alleles/haplotypes will hasten marker-assisted introgression of salt tolerance from S. pimpinellifolium into cultivated tomato.
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