Evidence map›Paper›PMID 26160547›Full record

ArticleAntioxidants & redox signaling2016

Redox Activation of the Universally Conserved ATPase YchF by Thioredoxin 1.

Liya Hannemann, Ida Suppanz, Qiaorui Ba, Katherine MacInnes, Friedel Drepper, Bettina Warscheid, Hans-Georg Koch

Open access · hybridAbstract read
In one paragraph

Article in Antioxidants & redox signaling, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. OLA1 Phosphorylation Governs the Mitochondrial Bioenergetic Function of Pulmonary Vascular Cells.American journal of respiratory cell and molecular biology · 2023
    Article
  6. Review
  7. Article
  8. Article
  9. Isolate Specific Cold Response ofFrontiers in microbiology · 2019
    Article
  10. Article
  11. Article
  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Liya Hannemann1 Institut für Biochemie und Molekularbiologie, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Ida Suppanz2 Faculty of Biology, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Qiaorui Ba1 Institut für Biochemie und Molekularbiologie, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Katherine MacInnes1 Institut für Biochemie und Molekularbiologie, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Friedel Drepper2 Faculty of Biology, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Bettina Warscheid2 Faculty of Biology, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
Hans-Georg Koch1 Institut für Biochemie und Molekularbiologie, Albert-Ludwigs-Universität Freiburg , Freiburg, Germany .
University of Freiburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimsYchF/Ola1 are unconventional members of the universally conserved GTPase family because they preferentially hydrolyze ATP rather than GTP. These ATPases have been associated with various cellular processes and pathologies, including DNA repair, tumorigenesis, and apoptosis. In particular, a possible role in regulating the oxidative stress response has been suggested for both bacterial and human YchF/Ola1. In this study, we analyzed how YchF responds to oxidative stress and how it potentially regulates the antioxidant response.

resultsOur data identify a redox-regulated monomer-dimer equilibrium of YchF as a key event in the functional cycle of YchF. Upon oxidative stress, the oxidation of a conserved and surface-exposed cysteine residue promotes YchF dimerization, which is accompanied by inhibition of the ATPase activity. No dimers were observed in a YchF mutant lacking this cysteine. In vitro, the YchF dimer is dissociated by thioredoxin 1 (TrxA) and this stimulates the ATPase activity. The physiological significance of the YchF-thioredoxin 1 interaction was demonstrated by in vivo cross-linking, which validated this interaction in living cells. This approach also revealed that both the ATPase domain and the helical domain of YchF are in contact with TrxA. INNOVATION: YchF/Ola1 are the first redox-regulated members of the universally conserved GTPase family and are inactivated by oxidation of a conserved cysteine residue within the nucleotide-binding motif.

conclusionOur data provide novel insights into the regulation of the so far ill-defined YchF/Ola1 family of proteins and stipulate their role as negative regulators of the oxidative stress response.

Indexed as

Adenosine TriphosphatasesAdenosine TriphosphateAntioxidantsCysteineEscherichia coliEscherichia coli ProteinsGlutathioneHumansHydrolysisOxidation-ReductionOxidative StressThioredoxinsAdenosine TriphosphatasesAdenosine TriphosphateAntioxidantsCysteineEscherichia coli ProteinsGlutathioneThioredoxinsYchF protein, E. coli

Identifiers

PMID26160547
PMCPMC4742990
OpenAlexW829454443

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.