Evidence map›Paper›PMID 26160173›Full record

ArticleThe Journal of biological chemistry2015

Aerobic Growth of Escherichia coli Is Reduced, and ATP Synthesis Is Selectively Inhibited when Five C-terminal Residues Are Deleted from the ϵ Subunit of ATP Synthase.

Naman B Shah, Thomas M Duncan

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 40 citations in OpenAlex.

  1. Cryo-EM reveals transition states of the Acinetobacter baumannii FFASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  2. Article
  3. Mechanism of ADP-Inhibited ATP Hydrolysis in Single Proton-Pumping FInternational journal of molecular sciences · 2023
    Article
  4. FInternational journal of molecular sciences · 2023
    Review
  5. Review
  6. Article
  7. Article
  8. Article
  9. Frontiers in bioengineering and biotechnology · 2021
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. The regulatory subunit ε in Escherichia coli FBiochimica et biophysica acta. Bioenergetics · 2018
    Review
  15. Review
  16. Article
  17. Regulation of the thermoalkaliphilic F1-ATPase from Caldalkalibacillus thermarum.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Naman B ShahDepartment of Biochemistry and Molecular Biology, State University of New York, Upstate Medical University, Syracuse, New York 13210.
Thomas M DuncanDepartment of Biochemistry and Molecular Biology, State University of New York, Upstate Medical University, Syracuse, New York 13210. Electronic address: duncant@upstate.edu.
SUNY Upstate Medical University · US

Funding

Energy Coupling and Regulation in the ATP Synthase of E. coliR01GM083088 · NIGMS · UPSTATE MEDICAL UNIVERSITY · PI DUNCAN, THOMAS M · 2009 to 2012
$1.6M
NIGMS NIH HHS R01 GM083088NIGMS NIH HHS R01GM083088
6 · The paper itself

Abstract

F-type ATP synthases are rotary nanomotor enzymes involved in cellular energy metabolism in eukaryotes and eubacteria. The ATP synthase from Gram-positive and -negative model bacteria can be autoinhibited by the C-terminal domain of its ϵ subunit (ϵCTD), but the importance of ϵ inhibition in vivo is unclear. Functional rotation is thought to be blocked by insertion of the latter half of the ϵCTD into the central cavity of the catalytic complex (F1). In the inhibited state of the Escherichia coli enzyme, the final segment of ϵCTD is deeply buried but has few specific interactions with other subunits. This region of the ϵCTD is variable or absent in other bacteria that exhibit strong ϵ-inhibition in vitro. Here, genetically deleting the last five residues of the ϵCTD (ϵΔ5) caused a greater defect in respiratory growth than did the complete absence of the ϵCTD. Isolated membranes with ϵΔ5 generated proton-motive force by respiration as effectively as with wild-type ϵ but showed a nearly 3-fold decrease in ATP synthesis rate. In contrast, the ϵΔ5 truncation did not change the intrinsic rate of ATP hydrolysis with membranes. Further, the ϵΔ5 subunit retained high affinity for isolated F1 but reduced the maximal inhibition of F1-ATPase by ϵ from >90% to ∼20%. The results suggest that the ϵCTD has distinct regulatory interactions with F1 when rotary catalysis operates in opposite directions for the hydrolysis or synthesis of ATP.

Indexed as

Base SequenceProtonsSequence DeletionAdenosine TriphosphateATPase Inhibitory ProteinBiocatalysisCell MembraneEscherichia coliEscherichia coli ProteinsGene ExpressionHydrolysisKineticsModels, MolecularMolecular Sequence DataProteinsProtein Structure, TertiaryAdenosine TriphosphateATPase Inhibitory ProteinEscherichia coli ProteinsProteinsProtonsantibioticsATP synthasebioenergeticsenzyme inhibitorepsilon subunitEscherichia coli (E. coli)mutagenesisoxidative phosphorylationproton-translocating ATPases

Identifiers

PMID26160173
PMCPMC4543661
OpenAlexW1505493330

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.