Evidence map›Paper›PMID 26159857›Full record

ArticleNature communications2015

Ubinuclein-1 confers histone H3.3-specific-binding by the HIRA histone chaperone complex.

M Daniel Ricketts, Brian Frederick, Henry Hoff, Yong Tang, David C Schultz, Taranjit Singh Rai, Maria Grazia Vizioli, Peter D Adams, Ronen Marmorstein

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 82 papers.

0numbers the graph read from it
0cells of the map it votes in
82citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

82 citing papers in PubMed, 123 citations in OpenAlex.

  1. Review
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  16. Article
  17. Multiple Roles of dXNP and dADD1-International journal of molecular sciences · 2023
    Review
  18. Review
  19. Article
  20. The Histone Chaperone Network Is Highly Conserved inInternational journal of molecular sciences · 2023
    Article

22 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

M Daniel Ricketts1] Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA [2] Graduate Group in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
Brian FrederickThe Wistar Institute, Philadelphia, Pennsylvania, 19104, USA.
Henry HoffThe Wistar Institute, Philadelphia, Pennsylvania, 19104, USA.
Yong TangThe Wistar Institute, Philadelphia, Pennsylvania, 19104, USA.
David C SchultzThe Wistar Institute, Philadelphia, Pennsylvania, 19104, USA.
Taranjit Singh Rai1] Institute of Cancer Sciences, CR-UK Beatson Labs, University of Glasgow, Glasgow G61 1BD, UK [2] Institute of Biomedical and Environmental Health Research, University of West of Scotland, Paisley PA1 2BE, UK.
Maria Grazia VizioliInstitute of Cancer Sciences, CR-UK Beatson Labs, University of Glasgow, Glasgow G61 1BD, UK.
Peter D AdamsInstitute of Cancer Sciences, CR-UK Beatson Labs, University of Glasgow, Glasgow G61 1BD, UK.
Ronen Marmorstein1] Department of Biochemistry and Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA [2] Graduate Group in Biochemistry and Molecular Biophysics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA [3] Abramson Family Cancer Research Institute, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA.
The Wistar Institute · USUniversity of Glasgow · GBCancer Research Institute · USCancer Research UK Scotland Institute · GBUniversity of Pennsylvania · US

Funding

Tumor Microenvironment and MetastasisP30CA010815 · NCI · WISTAR INSTITUTE · PI Luis J Montaner · 1985 to 2026
$75.9M
STRUCTURAL BASIS FOR EPIGENETICS IN AGING AND LONGEVITYP01AG031862 · NIA · WISTAR INSTITUTE · PI GARCIA, BENJAMIN A · 2008 to 2022
$28.3M
NCI NIH HHS CA010815NCI NIH HHS P30 CA010815NIA NIH HHS AG031862NIA NIH HHS P01 AG031862
6 · The paper itself

Abstract

Histone chaperones bind specific histones to mediate their storage, eviction or deposition from/or into chromatin. The HIRA histone chaperone complex, composed of HIRA, ubinuclein-1 (UBN1) and CABIN1, cooperates with the histone chaperone ASF1a to mediate H3.3-specific binding and chromatin deposition. Here we demonstrate that the conserved UBN1 Hpc2-related domain (HRD) is a novel H3.3-specific-binding domain. Biochemical and biophysical studies show the UBN1-HRD preferentially binds H3.3/H4 over H3.1/H4. X-ray crystallographic and mutational studies reveal that conserved residues within the UBN1-HRD and H3.3 G90 as key determinants of UBN1-H3.3-binding specificity. Comparison of the structure with the unrelated H3.3-specific chaperone DAXX reveals nearly identical points of contact between the chaperone and histone in the proximity of H3.3 G90, although the mechanism for H3.3 G90 recognition appears to be distinct. This study points to UBN1 as the determinant of H3.3-specific binding and deposition by the HIRA complex.

Indexed as

Protein Interaction Domains and MotifsAdaptor Proteins, Signal TransducingAnimalsBinding SitesCalorimetryCell Cycle ProteinsChromatinCo-Repressor ProteinsCrystallizationCrystallography, X-RayHistone ChaperonesHistonesHumansMolecular ChaperonesNuclear ProteinsProtein BindingAdaptor Proteins, Signal TransducingASF1A protein, humanCABIN1 protein, humanCell Cycle ProteinsChromatinCo-Repressor ProteinsDAXX protein, humanHIRA protein, humanHistone ChaperonesHistonesMolecular ChaperonesNuclear ProteinsRecombinant ProteinsTranscription FactorsUBN1 protein, humanXenopus Proteins

Identifiers

PMID26159857
PMCPMC4510971
OpenAlexW2178357398

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.