Evidence map›Paper›PMID 26159733›Full record

ArticleJournal of cell science2015

Robust hematopoietic progenitor cell commitment in the presence of a conflicting cue.

Najaf A Shah, Marshall J Levesque, Arjun Raj, Casim A Sarkar

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Journal of cell science, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.5field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Najaf A ShahGenomics and Computational Biology Graduate Group, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Marshall J LevesqueDepartment of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA.
Arjun RajDepartment of Bioengineering, School of Engineering and Applied Science, University of Pennsylvania, Philadelphia, PA 19104, USA.
Casim A SarkarDepartment of Biomedical Engineering, College of Science and Engineering, University of Minnesota, Minneapolis, MN 55455, USA csarkar@umn.edu.
University of Pennsylvania · USUniversity of Minnesota · US

Funding

A Comprehensive Spatial Picture of Transcription in the NucleusDP2OD008514 · OD · UNIVERSITY OF PENNSYLVANIA · PI RAJ, ARJUN · 2011 to 2011
$2.4M
Interplay between signaling and noise in cellular decision makingR01GM113985 · NIGMS · UNIVERSITY OF MINNESOTA · PI SARKAR, CASIM · 2015 to 2019
$1.7M
NIGMS NIH HHS 1R01GM113985NIGMS NIH HHS R01 GM113985NIH HHS 1DP2OD008514NIH HHS DP2 OD008514
6 · The paper itself

Abstract

Hematopoietic lineage commitment is regulated by cytokines and master transcription factors, but it remains unclear how a progenitor cell chooses a lineage in the face of conflicting cues. Through transcript counting in megakaryocyte-erythroid progenitors undergoing erythropoiesis, we show that the expression levels of the pro-erythropoiesis transcription factor EKLF (also known as KLF1) and receptor EpoR are inversely correlated with their pro-megakaryopoiesis counterparts, FLI-1 and TpoR (also known as MPL). Notably, as progenitors commit to the erythrocyte lineage, EpoR is upregulated and TpoR is strongly downregulated, thus boosting the potency of the pro-erythropoiesis cue erythropoietin and effectively eliminating the activity of the pro-megakaryopoiesis cue thrombopoietin. Based on these findings, we propose a new model for exclusive decision making that explicitly incorporates signals from extrinsic cues, and we experimentally confirm a model prediction of temporal changes in transcript noise levels in committing progenitors. Our study suggests that lineage-specific receptor levels can modulate potencies of cues to achieve robust commitment decisions.

Indexed as

Cell DifferentiationCell LineageErythropoiesisGene Expression Regulation, DevelopmentalHematopoietic Stem CellsHumansKruppel-Like Transcription FactorsMegakaryocytesProto-Oncogene Protein c-fli-1Receptors, ErythropoietinReceptors, ThrombopoietinThrombopoietinerythroid Kruppel-like factorFLI1 protein, humanKruppel-Like Transcription FactorsMPL protein, humanProto-Oncogene Protein c-fli-1Receptors, ErythropoietinReceptors, ThrombopoietinThrombopoietinConflicting cueHematopoiesisLineage commitment

Identifiers

PMID26159733
PMCPMC4541040
OpenAlexW2171443368

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.