Evidence map›Paper›PMID 26159519›Full record

ArticleBMC cancer2015

Acquired genetic alterations in tumor cells dictate the development of high-risk neuroblastoma and clinical outcomes.

Faizan H Khan, Vijayabaskar Pandian, Satishkumar Ramraj, Mohan Natarajan, Sheeja Aravindan, Terence S Herman, Natarajan Aravindan

Open access · goldAbstract read
In one paragraph

Article in BMC cancer, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
4.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 78 citations in OpenAlex.

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  20. TTLL12 expression in ovarian cancer correlates with a poor outcome.International journal of clinical and experimental pathology · 2020
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Faizan H KhanDepartment of Radiation Oncology, University of Oklahoma Health Sciences Science Center, 940 Stanton L. Young Blvd., BMSB 737, Oklahoma City, OK, 73104, USA. Faizan-Khan@ouhsc.edu.
Vijayabaskar PandianDepartment of Radiation Oncology, University of Oklahoma Health Sciences Science Center, 940 Stanton L. Young Blvd., BMSB 737, Oklahoma City, OK, 73104, USA. Vijayabaskar-Pandian@ouhsc.edu.
Satishkumar RamrajDepartment of Radiation Oncology, University of Oklahoma Health Sciences Science Center, 940 Stanton L. Young Blvd., BMSB 737, Oklahoma City, OK, 73104, USA. Satish-Ramraj@ouhsc.edu.
Mohan NatarajanDepartment of Pathology, University of Texas Health Sciences Center, San Antonio, TX, USA. natarajan@uthscsa.edu.
Sheeja AravindanStephenson Cancer Center, Oklahoma City, OK, USA. Sheeja-Aravindan@ouhsc.edu.
Terence S HermanDepartment of Radiation Oncology, University of Oklahoma Health Sciences Science Center, 940 Stanton L. Young Blvd., BMSB 737, Oklahoma City, OK, 73104, USA. Terence-Herman@ouhsc.edu.
Natarajan AravindanDepartment of Radiation Oncology, University of Oklahoma Health Sciences Science Center, 940 Stanton L. Young Blvd., BMSB 737, Oklahoma City, OK, 73104, USA. naravind@ouhsc.edu.
University of Oklahoma Health Sciences Center · USOklahoma State University Oklahoma City · USThe University of Texas Health Science Center at San Antonio · US

Funding

TUMOR RESISTANCE MECHANISMS TO ANTI-VEGF THERAPY IN PROSTATE CANCER (Sukyung Woo)P20GM103639 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI HANNAFON, BETHANY · 2012 to 2022
$21.3M
NIGMS NIH HHS 1P20GM103639-01NIGMS NIH HHS P20 GM103639
6 · The paper itself

Abstract

backgroundDetermining the driving factors and molecular flow-through that define the switch from favorable to aggressive high-risk disease is critical to the betterment of neuroblastoma cure.

methodsIn this study, we examined the cytogenetic and tumorigenic physiognomies of distinct population of metastatic site- derived aggressive cells (MSDACs) from high-risk tumors, and showed the influence of acquired genetic rearrangements on poor patient outcomes.

resultsKaryotyping in SH-SY5Y and MSDACs revealed trisomy of 1q, with additional non-random chromosomal rearrangements on 1q32, 8p23, 9q34, 15q24, 22q13 (additions), and 7q32 (deletion). Array CGH analysis of individual clones of MSDACs revealed genetic alterations in chromosomes 1, 7, 8, and 22, corresponding to a gain in the copy numbers of LOC100288142, CD1C, CFHR3, FOXP2, MDFIC, RALYL, CSMD3, SAMD12-AS1, and MAL2, and a loss in ADAM5, LOC400927, APOBEC3B, RPL3, MGAT3, SLC25A17, EP300, L3MBTL2, SERHL, POLDIP3, A4GALT, and TTLL1. QPCR analysis and immunoblotting showed a definite association between DNA-copy number changes and matching transcriptional/translational expression in clones of MSDACs. Further, MSDACs exert a stem-like phenotype. Under serum-free conditions, MSDACs demonstrated profound tumorosphere formation ex vivo. Moreover, MSDACs exhibited high tumorigenic capacity in vivo and prompted aggressive metastatic disease. Tissue microarray analysis coupled with automated IHC revealed significant association of RALYL to the tumor grade in a cohort of 25 neuroblastoma patients. Clinical outcome association analysis showed a strong correlation between the expression of CFHR3, CSMD3, MDFIC, FOXP2, RALYL, POLDIP3, SLC25A17, SERHL, MGAT3, TTLL1, or LOC400927 and overall and relapse-free survival in patients with neuroblastoma.

conclusionTogether, these data highlight the ongoing acquired genetic rearrangements in undifferentiated tumor-forming neural crest cells, and suggest that these alterations could switch favorable neuroblastoma to high-risk aggressive disease, promoting poor clinical outcomes.

Indexed as

Genetic Association StudiesAnimalsCell Line, TumorChromosome AberrationsChromosome BandingComparative Genomic HybridizationDisease Models, AnimalDisease ProgressionDNA Copy Number VariationsHeterograftsHumansNeoplasm MetastasisNeoplasm StagingNeoplastic Stem CellsNeuroblastomaPrognosisRibosomal Protein L3

Identifiers

PMID26159519
PMCPMC4496850
OpenAlexW1923594999

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LicenceCC BY
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.