Evidence map›Paper›PMID 26156524›Full record

ArticleScientific reports2015

Regulation rewiring analysis reveals mutual regulation between STAT1 and miR-155-5p in tumor immunosurveillance in seven major cancers.

Chen-Ching Lin, Wei Jiang, Ramkrishna Mitra, Feixiong Cheng, Hui Yu, Zhongming Zhao

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 27 citations in OpenAlex.

  1. STAT1: a central hub linking ferroptosis and inflammation in hepatic ischemia-reperfusion injury.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2026
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Reciprocal regulations between miRNAs and HIF-1α in human cancers.Cellular and molecular life sciences : CMLS · 2019
    Review
  9. Article
  10. Article
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. MicroRNA regulation of macrophages in human pathologies.Cellular and molecular life sciences : CMLS · 2016
    Review
  17. Review
  18. Article
  19. Human Absorbable MicroRNA Prediction based on an Ensemble Manifold Ranking Model.Proceedings. IEEE International Conference on Bioinformatics and Biomedicine · 2015
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chen-Ching LinDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Wei JiangDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Ramkrishna MitraDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Feixiong ChengDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Hui YuDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Zhongming ZhaoDepartment of Biomedical Informatics, Vanderbilt University School of Medicine, Nashville, Tennessee 37203, USA.
Vanderbilt University · US

Funding

Tumor Immunology and Microenvironment Research ProgramP30CA068485 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI MATTHEW J TYSKA · 1995 to 2026
$172.8M
TISSUE CoreP50CA098131 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI PARK, BEN HO, PIETENPOL, JENNIFER A · 2003 to 2024
$48.7M
Understanding and Controlling p120 Dysfunction in CRCP50CA095103 · NCI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI COFFEY, ROBERT J. · 2002 to 2017
$33.6M
Mapping the Genetic Architecture of Complex Disease via RNA-seq and GWAS DataR01LM011177 · NLM · VANDERBILT UNIVERSITY · PI ZHAO, ZHONGMING · 2012 to 2014
$1.0M
Investigating MicroRNAs and Their Regulatory Networks in GlioblastomaR03CA167695 · NCI · VANDERBILT UNIVERSITY · PI ZHAO, ZHONGMING · 2013 to 2014
$154k
NCI NIH HHS P30 CA068485NCI NIH HHS P30CA68485NCI NIH HHS P50 CA095103NCI NIH HHS P50CA095103NCI NIH HHS P50 CA098131NCI NIH HHS P50CA098131NCI NIH HHS R03 CA167695NCI NIH HHS R03CA167695NLM NIH HHS R01 LM011177NLM NIH HHS R01LM011177
6 · The paper itself

Abstract

Transcription factors (TFs) and microRNAs (miRNAs) form a gene regulatory network (GRN) at the transcriptional and post-transcriptional level in living cells. However, this network has not been well characterized, especially in regards to the mutual regulations between TFs and miRNAs in cancers. In this study, we collected those regulations inferred by ChIP-Seq or CLIP-Seq to construct the GRN formed by TFs, miRNAs, and target genes. To increase the reliability of the proposed network and examine the regulation activity of TFs and miRNAs, we further incorporated the mRNA and miRNA expression profiles in seven cancer types using The Cancer Genome Atlas data. We observed that regulation rewiring was prevalent during tumorigenesis and found that the rewired regulatory feedback loops formed by TFs and miRNAs were highly associated with cancer. Interestingly, we identified one regulatory feedback loop between STAT1 and miR-155-5p that is consistently activated in all seven cancer types with its function to regulate tumor-related biological processes. Our results provide insights on the losing equilibrium of the regulatory feedback loop between STAT1 and miR-155-5p influencing tumorigenesis.

Indexed as

Cell Transformation, NeoplasticFeedback, PhysiologicalGene Expression RegulationGene Regulatory NetworksHumansImmunologic SurveillanceImmunomodulationMicroRNAsNeoplasmsProteasome Endopeptidase ComplexSignal TransductionSTAT1 Transcription FactorTranscription FactorsMicroRNAsMIRN155 microRNA, humanProteasome Endopeptidase ComplexSTAT1 Transcription FactorTranscription Factors

Identifiers

PMID26156524
PMCPMC4496795
OpenAlexW2271260129

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.