Evidence map›Paper›PMID 26154161›Full record

ArticlePloS one2015

Use of a New High Resolution Melting Method for Genotyping Pathogenic Leptospira spp.

Florence Naze, Amélie Desvars, Mathieu Picardeau, Pascale Bourhy, Alain Michault

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 2 pooled it
3.3field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 2 syntheses or guidelines pooled it, 40 citations in OpenAlex.

  1. Pooled it
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  4. Review
  5. Clinical manifestations of human leptospirosis: bacteria matter.Frontiers in cellular and infection microbiology · 2023
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  14. Molecular diagnostics for human leptospirosis.Current opinion in infectious diseases · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Florence NazeDepartment of Microbiology, CHU de La Reunion, Saint-Pierre, La Réunion, France.
Amélie DesvarsDepartment of Microbiology, CHU de La Reunion, Saint-Pierre, La Réunion, France.
Mathieu PicardeauUnité de Biologie des Spirochètes, National Reference Center and WHO Collaborating Center for Leptospirosis, Institut Pasteur, Paris, France.
Pascale BourhyUnité de Biologie des Spirochètes, National Reference Center and WHO Collaborating Center for Leptospirosis, Institut Pasteur, Paris, France.
Alain MichaultDepartment of Microbiology, CHU de La Reunion, Saint-Pierre, La Réunion, France.
Centre Hospitalier Universitaire de La Réunion · FRInstitut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLeptospirosis is a worldwide zoonosis that is endemic in tropical areas, such as Reunion Island. The species Leptospira interrogans is the primary agent in human infections, but other pathogenic species, such as L. kirschner and L. borgpetersenii, are also associated with human leptospirosis. METHODS AND

findingsIn this study, a melting curve analysis of the products that were amplified with the primer pairs lfb1 F/R and G1/G2 facilitated an accurate species classification of Leptospira reference strains. Next, we combined an unsupervised high resolution melting (HRM) method with a new statistical approach using primers to amplify a two variable-number tandem-repeat (VNTR) for typing at the subspecies level. The HRM analysis, which was performed with ScreenClust Software, enabled the identification of genotypes at the serovar level with high resolution power (Hunter-Gaston index 0.984). This method was also applied to Leptospira DNA from blood samples that were obtained from Reunion Island after 1998. We were able to identify a unique genotype that is identical to that of the L. interrogans serovars Copenhageni and Icterohaemorrhagiae, suggesting that this genotype is the major cause of leptospirosis on Reunion Island.

conclusionsOur simple, rapid, and robust genotyping method enables the identification of Leptospira strains at the species and subspecies levels and supports the direct genotyping of Leptospira in biological samples without requiring cultures.

Indexed as

Nucleic Acid DenaturationCluster AnalysisDNA, BacterialGenotypeGenotyping TechniquesHumansLeptospiraMinisatellite RepeatsReal-Time Polymerase Chain ReactionSoftwareSpecies SpecificityDNA, Bacterial

Identifiers

PMID26154161
PMCPMC4496072
OpenAlexW2337471775

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.