Evidence map›Paper›PMID 26154028›Full record

ArticleScientific reports2015

Crystal Structures of a Hyperthermophilic Archaeal Homoserine Dehydrogenase Suggest a Novel Cofactor Binding Mode for Oxidoreductases.

Junji Hayashi, Shota Inoue, Kwang Kim, Kazunari Yoneda, Yutaka Kawarabayasi, Toshihisa Ohshima, Haruhiko Sakuraba

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Molecular and Enzymatic Features of Homoserine Dehydrogenase fromJournal of microbiology and biotechnology · 2020
    Article
  4. Crystal structure of the NADPExtremophiles : life under extreme conditions · 2018
    Article
  5. Article
  6. Molecular Mechanisms of Enzyme Activation by Monovalent Cations.The Journal of biological chemistry · 2016
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Junji HayashiDepartment of Applied Biological Science, Faculty of Agriculture, Kagawa University, Ikenobe 2393, Miki-cho, Kagawa 761-0795, Japan.
Shota InoueDepartment of Applied Biological Science, Faculty of Agriculture, Kagawa University, Ikenobe 2393, Miki-cho, Kagawa 761-0795, Japan.
Kwang KimDepartment of Biological Sciences, Graduate School of Science, Osaka University, Osaka 560-0043, Japan.
Kazunari YonedaDepartment of Bioscience, School of Agriculture, Tokai University, Aso, Kumamoto, 869-1404, Japan.
Yutaka KawarabayasiHealth Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Amagasaki 661-0974, Japan.
Toshihisa OhshimaDepartment of Biomedical Engineering, Faculty of Engineering, Osaka Institute of Technology, 5-16-1, Ohmiya, Asahi-ku, Osaka, 535-8585, Japan.
Haruhiko SakurabaDepartment of Applied Biological Science, Faculty of Agriculture, Kagawa University, Ikenobe 2393, Miki-cho, Kagawa 761-0795, Japan.
Kagawa University · JPKyushu Tokai University · JPKyushu University · JPOsaka Institute of Technology · JPOsaka University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

NAD(P)-dependent dehydrogenases differ according to their coenzyme preference: some prefer NAD, others NADP, and still others exhibit dual cofactor specificity. The structure of a newly identified archaeal homoserine dehydrogenase showed this enzyme to have a strong preference for NADP. However, NADP did not act as a cofactor with this enzyme, but as a strong inhibitor of NAD-dependent homoserine oxidation. Structural analysis and site-directed mutagenesis showed that the large number of interactions between the cofactor and the enzyme are responsible for the lack of reactivity of the enzyme towards NADP. This observation suggests this enzyme exhibits a new variation on cofactor binding to a dehydrogenase: very strong NADP binding that acts as an obstacle to NAD(P)-dependent dehydrogenase catalytic activity.

Indexed as

Amino Acid SequenceArchaeaBinding SitesCatalysisHomoserine DehydrogenaseKineticsModels, MolecularMolecular Sequence DataNADPOxidoreductasesProtein BindingProtein ConformationSequence AlignmentSubstrate SpecificityHomoserine DehydrogenaseNADPOxidoreductases

Identifiers

PMID26154028
PMCPMC4495429
OpenAlexW2260478885

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.