ArticleNature biotechnology2015
Good laboratory practice for clinical next-generation sequencing informatics pipelines.
Abstract readLetter
In one paragraph
Article in Nature biotechnology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 74 papers, 1 of them a synthesis that pooled it.
0numbers the graph read from it
0cells of the map it votes in
74citing papers in PubMed, 1 pooled it
–field-weighted citation impact
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
74 citing papers in PubMed, 1 synthesis or guideline pooled it.
- International policies guiding the selection, analysis, and clinical management of secondary findings from genomic sequencing: A systematic review.American journal of human genetics · 2024Pooled it
- Development of an End-to-End Total RNA Sequencing Quality Control Framework for Blood-Based Biomarker Discovery.The Journal of molecular diagnostics : JMD · 2025Article
- Benchmarking of variant calling software for whole-exome sequencing using gold standard datasets.Scientific reports · 2025Article
- Diagnostic next-generation sequencing to detect MYD88 L265P in Lymphoplasmacytic lymphoma compared to ddPCR.Experimental and molecular pathology · 2025Article
- Molecular techniques in haematopathology: what and how?Histopathology · 2025Review
- Considerations for Severe Acute Respiratory Syndrome Coronavirus 2 Genomic Surveillance: A Joint Consensus Recommendation of the Association for Molecular Pathology and Association of Public Health Laboratories.The Journal of molecular diagnostics : JMD · 2025Review
- Evaluation of next-generation sequencing versus next-generation flow cytometry for minimal-residual-disease detection in Chinese patients with multiple myeloma.Discover oncology · 2024Article
- Establishing a Pregnancy Lyme Disease Biobank.Methods in molecular biology (Clifton, N.J.) · 2024Article
- Applications of genome sequencing as a single platform for clinical constitutional genetic testing.Genetics in medicine open · 2024Review
- Using Genomics to Understand the Epidemiology of Infectious Diseases in the Northern Territory of Australia.Tropical medicine and infectious disease · 2022Review
- Normalization of clonal diversity in gene therapy studies using shape constrained splines.Scientific reports · 2022Article
- Analysis of the landscape of human enhancer sequences in biological databases.Computational and structural biotechnology journal · 2022Article
- [Expert consensus on laboratory standardized technical specifications for monitoring minimal residual disease using next-generation sequencing in multiple myeloma(2021)].Zhonghua xue ye xue za zhi = Zhonghua xueyexue zazhi · 2021Article
- Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA.Cell reports methods · 2021Article
- VPMBench: a test bench for variant prioritization methods.BMC bioinformatics · 2021Article
- Design considerations for workflow management systems use in production genomics research and the clinic.Scientific reports · 2021Article
- Current scenario of the genetic testing for rare neurological disorders exploiting next generation sequencing.Neural regeneration research · 2021Review
- Interplay between probe design and test performance: overlap between genomic regions of interest, capture regions and high quality reference calls influence performance of WES-based assays.Human genetics · 2021Article
- National external quality assessment for next-generation sequencing-based diagnostics of primary immunodeficiencies.European journal of human genetics : EJHG · 2021Article
- Article
14 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
40 authors.
Amy S GargisDivision of Laboratory Systems, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Lisa KalmanDivision of Laboratory Systems, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
David P BickDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Cristina da SilvaDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.
David P DimmockDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.ORCID 0000000166902523
Birgit H Funke1] Laboratory for Molecular Medicine, Partners Healthcare Personalized Medicine, Cambridge, Massachusetts, USA. [2] Department of Pathology, Harvard Medical School, Boston, Massachusetts, USA.
Sivakumar Gowrisankar1] Laboratory for Molecular Medicine, Partners Healthcare Personalized Medicine, Cambridge, Massachusetts, USA. [2] Department of Pathology, Harvard Medical School, Boston, Massachusetts, USA.
Madhuri R HegdeDepartment of Human Genetics, Emory University School of Medicine, Atlanta, Georgia, USA.
Shashikant Kulkarni1] Department of Genetics, Washington University School of Medicine, St. Louis, Missouri, USA. [2] Department of Pediatrics, Washington University School of Medicine, St. Louis, Missouri, USA. [3] Department of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Christopher E MasonDepartment of Physiology and Biophysics, Cornell University, New York, New York, USA.
Rakesh NagarajanDepartment of Pathology and Immunology, Washington University School of Medicine, St. Louis, Missouri, USA.
Karl V Voelkerding1] Department of Pathology, University of Utah, Salt Lake City, Utah, USA. [2] Institute for Clinical and Experimental Pathology, Associated Regional and University Pathologists (ARUP) Laboratories, Salt Lake City, Utah, USA.
Elizabeth A WortheyDepartment of Pediatrics, Medical College of Wisconsin, Milwaukee, Wisconsin, USA.
Nazneen AzizCollege of American Pathologists, Northfield, Illinois, USA.
John BarnesNational Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Sarah F BennettDivision of Laboratory Services, Centers for Medicare and Medicaid Services, Baltimore, Maryland, USA.
Himani BishtCenter for Devices and Radiological Health, Food and Drug Administration, Silver Spring, Maryland, USA.
Deanna M ChurchNational Center for Biotechnology Information, National Institutes of Health, Bethesda, Maryland, USA.
Zoya DimitrovaDivision of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Shaw R GargisDivision of Select Agents and Toxins, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Nabil HafezGenomeQuest, Westborough, Massachusetts, USA.
Tina HambuchClinical Services, Illumina, San Diego, California, USA.
Fiona C L HylandThermo Fisher Scientific, South San Francisco, California, USA.
Ruth Ann LunaTexas Children's Microbiome Center, Texas Children's Hospital and Department of Pathology &Immunology, Baylor College of Medicine, Houston, Texas, USA.
Duncan MacCannellNational Center for Emerging and Zoonotic Infectious Diseases, Centers for Disease Control and Prevention, Atlanta, Georgia USA.
Tobias MannIllumina, San Diego, California, USA.
Megan R McCluskeySoftGenetics, State College, Pennsylvania, USA.
Timothy K McDanielOncology, Illumina, San Diego, California, USA.
Lilia M Ganova-RaevaDivision of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Heidi L Rehm1] Laboratory for Molecular Medicine, Partners Healthcare Personalized Medicine, Cambridge, Massachusetts, USA. [2] Department of Pathology, Harvard Medical School, Boston, Massachusetts, USA.
Jeffrey ReidDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
David S CampoDivision of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Richard B ResnickGenomeQuest, Westborough, Massachusetts, USA.
Perry G RidgeDepartment of Pathology, University of Utah, Salt Lake City, Utah, USA.
Marc L SalitMaterial Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland, USA.
Pavel SkumsDivision of Viral Hepatitis, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Lee-Jun C WongDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.
Barbara A ZehnbauerDivision of Laboratory Systems, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Justin M ZookMaterial Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, Maryland, USA.
Ira M LubinDivision of Laboratory Systems, Centers for Disease Control and Prevention, Atlanta, Georgia, USA.
Funding
Resource ProjectU41HG006834 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI REHM, HEIDI L · 2013 to 2020
$26.9MIntegration of Whole Genome Sequencing into Clinical MedicineU01HG006500 · NHGRI · BRIGHAM AND WOMEN'S HOSPITAL · PI GREEN, ROBERT C. · 2012 to 2016
$11.5MIntramural CDC HHS CC999999NHGRI NIH HHS U01 HG006500NHGRI NIH HHS U01HG006500NHGRI NIH HHS U41 HG006834NHGRI NIH HHS U41HG006834
Abstract
PubMed holds no abstract for this paper.
Indexed as
Databases, GeneticHigh-Throughput Nucleotide SequencingHumansLaboratoriesMedical InformaticsMolecular Diagnostic TechniquesSequence Analysis, DNA
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.