Evidence map›Paper›PMID 26153233›Full record

ArticleDevelopment (Cambridge, England)2015

C. elegans SoxB genes are dispensable for embryonic neurogenesis but required for terminal differentiation of specific neuron types.

Berta Vidal, Anthony Santella, Esther Serrano-Saiz, Zhirong Bao, Chiou-Fen Chuang, Oliver Hobert

Open access · bronzeAbstract read
In one paragraph

Article in Development (Cambridge, England), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 44 citations in OpenAlex.

  1. Article
  2. Early nervous system development in the chaetognathFrontiers in cell and developmental biology · 2026
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  12. Proceedings of the National Academy of Sciences of the United States of America · 2022
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  14. Review
  15. Article
  16. Article
  17. Structural Analysis of theFrontiers in neuroanatomy · 2021
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  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Berta VidalDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University Medical Center, New York, NY 10032, USA bvi2001@columbia.edu or38@columbia.edu.
Anthony SantellaDevelopmental Biology Program, Sloan-Kettering Institute, New York, NY 10065, USA.
Esther Serrano-SaizDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University Medical Center, New York, NY 10032, USA.
Zhirong BaoDevelopmental Biology Program, Sloan-Kettering Institute, New York, NY 10065, USA.
Chiou-Fen ChuangDepartment of Biological Sciences, University of Illinois at Chicago, Chicago, IL 60607, USA.
Oliver HobertDepartment of Biochemistry and Molecular Biophysics, Howard Hughes Medical Institute, Columbia University Medical Center, New York, NY 10032, USA bvi2001@columbia.edu or38@columbia.edu.
Howard Hughes Medical Institute · USKettering University · USColumbia University Irving Medical Center · USUniversity of Illinois Chicago · US

Funding

X-RAY CRYSTALLOGRAPHYP30CA008748 · NCI · SLOAN-KETTERING INSTITUTE FOR CANCER RES · PI Nicholas D Socci · 1985 to 2026
$347.4M
LIM HOMEOBOX GENE LIM-6 IN MOTOR NEURON DIFFERENTIATIONR01NS039996 · NINDS · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Oliver Hobert · 2001 to 2026
$6.8M
WormGUIDES: A Resource for Global Understanding in Dynamic Embryonic SystemsR24OD016474 · OD · YALE UNIVERSITY · PI BAO, ZHIRONG, COLON-RAMOS, DANIEL A · 2013 to 2020
$6.5M
Genetic analysis of dopaminergic neuron specification in C.elegansR01NS050266 · NINDS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HOBERT, OLIVER · 2004 to 2013
$3.4M
The Ubiquitin-Proteasome System in Metazoan EmbryogenesisR01GM097576 · NIGMS · SLOAN-KETTERING INST CAN RESEARCH · PI BAO, ZHIRONG · 2011 to 2020
$3.3M
An integrated system to monitor complex tissues at single-cell resolutionU01HD075602 · NICHD · SLOAN-KETTERING INST CAN RESEARCH · PI BAO, ZHIRONG · 2012 to 2016
$3.1M
Specification of Stochastic Left-Right Asymmetric Neuronal Fates in C. elegansR01GM098026 · NIGMS · UNIVERSITY OF ILLINOIS AT CHICAGO · PI CHUANG, CHIOU-FEN · 2012 to 2016
$1.5M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA008748NICHD NIH HHS U01 HD075602NIGMS NIH HHS R01 GM097576NIGMS NIH HHS R01 GM098026NIGMS NIH HHS R01GM098026NIH HHS R24 OD016474NINDS NIH HHS R01 NS039996NINDS NIH HHS R01NS039996-05NINDS NIH HHS R01 NS050266NINDS NIH HHS R01NS050266-03
6 · The paper itself

Abstract

Neurogenesis involves deeply conserved patterning molecules, such as the proneural basic helix-loop-helix transcription factors. Sox proteins and specifically members of the SoxB and SoxC groups are another class of conserved transcription factors with an important role in neuronal fate commitment and differentiation in various species. In this study, we examine the expression of all five Sox genes of the nematode C. elegans and analyze the effect of null mutant alleles of all members of the SoxB and SoxC groups on nervous system development. Surprisingly, we find that, unlike in other systems, neither of the two C. elegans SoxB genes sox-2 (SoxB1) and sox-3 (SoxB2), nor the sole C. elegans SoxC gene sem-2, is broadly expressed throughout the embryonic or adult nervous system and that all three genes are mostly dispensable for embryonic neurogenesis. Instead, sox-2 is required to maintain the developmental potential of blast cells that are generated in the embryo but divide only postembryonically to give rise to differentiated neuronal cell types. Moreover, sox-2 and sox-3 have selective roles in the terminal differentiation of specific neuronal cell types. Our findings suggest that the common themes of SoxB gene function across phylogeny lie in specifying developmental potential and, later on, in selectively controlling terminal differentiation programs of specific neuron types, but not in broadly controlling neurogenesis.

Indexed as

Gene Expression Regulation, DevelopmentalAllelesAnimalsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegansCaenorhabditis elegans ProteinsCell DifferentiationCell LineageMaleMotor NeuronsMutationNervous SystemNeurogenesisNeuronsSignal TransductionSOXB1 Transcription FactorsBasic Helix-Loop-Helix ProteinsCaenorhabditis elegans ProteinsSOXB1 Transcription FactorsSOXC Transcription FactorsCaenorhabditis elegansNeurogenesisSox genes

Identifiers

PMID26153233
PMCPMC4510870
OpenAlexW1955060784

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.