Evidence map›Paper›PMID 26153062›Full record

ArticleClinical genetics2016

High-resolution microarray analysis unravels complex Xq28 aberrations in patients and carriers affected by X-linked blue cone monochromacy.

S A Yatsenko, H A Bakos, K Vitullo, M Kedrov, A Kishore, B J Jennings, U Surti, M A Wood-Trageser, S Cercone, A N Yatsenko and 2 more

Open access · greenAbstract read
In one paragraph

Article in Clinical genetics, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. The landscape of submicroscopic structural variants at theProceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  5. Article
  6. Next-Generation Sequencing Applications for Inherited Retinal Diseases.International journal of molecular sciences · 2021
    Review
  7. A high-resolution X chromosome copy-number variation map in fertile females and women with primary ovarian insufficiency.Genetics in medicine : official journal of the American College of Medical Genetics · 2019
    Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

S A YatsenkoPittsburgh Cytogenetics Laboratory, Center for Medical Genetics and Genomics, Magee-Womens Hospital of UPMC, Pittsburgh, PA, USA.
H A BakosPittsburgh Cytogenetics Laboratory, Center for Medical Genetics and Genomics, Magee-Womens Hospital of UPMC, Pittsburgh, PA, USA.
K VitulloPittsburgh Cytogenetics Laboratory, Center for Medical Genetics and Genomics, Magee-Womens Hospital of UPMC, Pittsburgh, PA, USA.
M KedrovDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee Health Science Center, Memphis, TN, USA.
A KishoreDepartment of Obstetrics, Gynecology and Reproductive Sciences, Pittsburgh, PA, USA.
B J JenningsDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee Health Science Center, Memphis, TN, USA.
U SurtiPittsburgh Cytogenetics Laboratory, Center for Medical Genetics and Genomics, Magee-Womens Hospital of UPMC, Pittsburgh, PA, USA.
M A Wood-TrageserDepartment of Obstetrics, Gynecology and Reproductive Sciences, Pittsburgh, PA, USA.
S CerconeDepartment of Obstetrics, Gynecology and Reproductive Sciences, Pittsburgh, PA, USA.
A N YatsenkoDepartment of Obstetrics, Gynecology and Reproductive Sciences, Pittsburgh, PA, USA.
A RajkovicPittsburgh Cytogenetics Laboratory, Center for Medical Genetics and Genomics, Magee-Womens Hospital of UPMC, Pittsburgh, PA, USA.
A IannacconeDepartment of Ophthalmology, Hamilton Eye Institute, University of Tennessee Health Science Center, Memphis, TN, USA.
Magee-Womens Hospital · USUniversity of Tennessee Health Science Center · USUniversity of Pittsburgh · US

Funding

Transcriptional Regulation of Early FolliculogenesisR01HD044858 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2004 to 2017
$2.9M
Genomic Basis of Premature Ovarian InsufficiencyR01HD070647 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2012 to 2016
$2.6M
Genetic Basis of Oligozoospermia in Infertile MalesK08HD058073 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YATSENKO, ALEXANDER N · 2010 to 2014
$625k
Genomic signatures of X-linked and autosomal candidate-genes in azoospermiaR21HD080755 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI YATSENKO, ALEXANDER N · 2015 to 2016
$448k
Genomic integrity of the X chromosome & Ovary-Specific Autosomal Genes R21HD074278 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI RAJKOVIC, ALEKSANDAR · 2014 to 2015
$441k
NICHD NIH HHS K08 HD058073NICHD NIH HHS R01 HD044858NICHD NIH HHS R01 HD070647NICHD NIH HHS R21 HD074278NICHD NIH HHS R21HD074278NICHD NIH HHS R21 HD080755
6 · The paper itself

Abstract

The human X chromosome contains ∼ 1600 genes, about 15% of which have been associated with a specific genetic condition, mainly affecting males. Blue cone monochromacy (BCM) is an X-linked condition caused by a loss-of-function of both the OPN1LW and OPN1MW opsin genes. The cone opsin gene cluster is composed of 2-9 paralogs with 99.8% sequence homology and is susceptible to deletions, duplications, and mutations. Current diagnostic tests employ polymerase chain reaction (PCR)-based technologies; however, alterations remain undetermined in 10% of patients. Furthermore, carrier testing in females is limited or unavailable. High-resolution X chromosome-targeted CGH microarray was applied to test for rearrangements in males with BCM and female carriers from three unrelated families. Pathogenic alterations were revealed in all probands, characterized by sequencing of the breakpoint junctions and quantitative real-time PCR. In two families, we identified a novel founder mutation that consisted of a complex 3-kb deletion that embraced the cis-regulatory locus control region and insertion of an additional aberrant OPN1MW gene. The application of high-resolution X-chromosome microarray in clinical diagnosis brings significant advantages in detection of small aberrations that are beyond the resolution of clinically available aCGH analysis and which can improve molecular diagnosis of the known conditions and unravel previously unrecognized X-linked diseases.

Indexed as

Chromosome AberrationsChromosomes, Human, XGenetic Diseases, X-LinkedHeterozygoteChromosome BreakpointsChromosome DeletionColor Vision DefectsComparative Genomic HybridizationConsanguinityGene OrderHumansMaleOligonucleotide Array Sequence AnalysisPedigreeaCGHblue cone monochromacycolor visionX chromosomeX-linked diseaseXq28 deletion

Identifiers

PMID26153062
PMCPMC4758204
OpenAlexW1486067996

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.