Evidence map›Paper›PMID 26152933›Full record

ArticleOrganic & biomolecular chemistry2015

Cyclic acetals as cleavable linkers for affinity capture.

Siyeon Lee, Wei Wang, Younjoo Lee, Nicole S Sampson

Open access · greenAbstract read
In one paragraph

Article in Organic & biomolecular chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Traceless Cleavage of Protein-Biotin Conjugates under Biologically Compatible Conditions.Chembiochem : a European journal of chemical biology · 2017
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Siyeon LeeDepartment of Chemistry, Stony Brook University, Stony Brook, NY 11794-3400, USA. nicole.sampson@stonybrook.edu.
Wei Wang
Younjoo Lee
Nicole S Sampson
Stony Brook University · USStony Brook Medicine · US

Funding

Polymer Probes of Cell-Cell InteractionsR01GM097971 · NIGMS · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S · 2011 to 2020
$2.3M
INVESTIGATION OF ADAMS IN MAMMALIAN FERTILIZATIONR01HD038519 · NICHD · STATE UNIVERSITY NEW YORK STONY BROOK · PI SAMPSON, NICOLE S · 2000 to 2010
$2.2M
NICHD NIH HHS R01 HD038519NICHD NIH HHS R01HD38519NIGMS NIH HHS R01 GM097971NIGMS NIH HHS R01GM097971
6 · The paper itself

Abstract

Labeling proteins with biotin is a widely used method to identify target proteins due to biotin's strong binding affinity for streptavidin. Combined with alkyne-azide cycloaddition, which enables the coupling of probes to targeted proteins, biotin tags linked to an alkyne or azide have become a powerful tool for purification and analysis of proteins in proteomics. However, biotin requires harsh elution conditions to release the captured protein from the bead matrix. Use of these conditions reduces signal to noise and complicates the analysis. To improve affinity capture, cleavable linkers have been introduced. Here, we demonstrate the use of a cyclic acetal biotin probe that is prepared easily from commercially available starting materials, is stable to cell lysates, yet is cleaved under mildly acidic conditions, and which provides an aldehyde for further elaboration of the protein, if desired.

Indexed as

AcetalsAldehydesAnimalsBiotinylationCattleSerum Albumin, BovineStreptavidinAcetalsAldehydesSerum Albumin, BovineStreptavidin

Identifiers

PMID26152933
PMCPMC4523064
OpenAlexW1796395951

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.