Evidence map›Paper›PMID 26152699›Full record

ArticleThe Plant cell2015

Cell-Type-Specific Cytokinin Distribution within the Arabidopsis Primary Root Apex.

Ioanna Antoniadi, Lenka Plačková, Biljana Simonovik, Karel Doležal, Colin Turnbull, Karin Ljung, Ondřej Novák

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 76 papers.

0numbers the graph read from it
0cells of the map it votes in
76citing papers in PubMed
29.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

76 citing papers in PubMed, 155 citations in OpenAlex.

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  16. Molecular framework integrating nitrate sensing in root and auxin-guided shoot adaptive responses.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
  18. Modeling Auxin Signaling in Roots: Auxin Computations.Cold Spring Harbor perspectives in biology · 2022
    Review
  19. Spatiotemporal analysis identifies ABF2 and ABF3 as key hubs of endodermal response to nitrate.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  20. Frontiers in plant science · 2022
    Article

16 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Ioanna AntoniadiUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden Department of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom.ORCID http://orcid.org/0000-0001-9053-2788
Lenka PlačkováLaboratory of Growth Regulators and Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany AS CR and Faculty of Science of Palacký University, Šlechtitelů 27, CZ-78371 Olomouc, Czech Republic.ORCID http://orcid.org/0000-0003-2537-4933
Biljana SimonovikUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden.ORCID http://orcid.org/0000-0002-0929-0791
Karel DoležalLaboratory of Growth Regulators and Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany AS CR and Faculty of Science of Palacký University, Šlechtitelů 27, CZ-78371 Olomouc, Czech Republic.
Colin TurnbullDepartment of Life Sciences, Imperial College London, London SW7 2AZ, United Kingdom.ORCID http://orcid.org/0000-0001-6635-1418
Karin LjungUmeå Plant Science Centre, Department of Forest Genetics and Plant Physiology, Swedish University of Agricultural Sciences, SE-901 83 Umeå, Sweden.ORCID http://orcid.org/0000-0003-2901-189X
Ondřej NovákLaboratory of Growth Regulators and Department of Chemical Biology and Genetics, Centre of the Region Haná for Biotechnological and Agricultural Research, Institute of Experimental Botany AS CR and Faculty of Science of Palacký University, Šlechtitelů 27, CZ-78371 Olomouc, Czech Republic novako@ueb.cas.cz.ORCID http://orcid.org/0000-0003-3452-0154
Czech Academy of Sciences, Institute of Experimental Botany · CZSwedish University of Agricultural Sciences · SEImperial College London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cytokinins (CKs) play a crucial role in many physiological and developmental processes at the levels of individual plant components (cells, tissues, and organs) and by coordinating activities across these parts. High-resolution measurements of intracellular CKs in different plant tissues can therefore provide insights into their metabolism and mode of action. Here, we applied fluorescence-activated cell sorting of green fluorescent protein (GFP)-marked cell types, combined with solid-phase microextraction and an ultra-high-sensitivity mass spectrometry (MS) method for analysis of CK biosynthesis and homeostasis at cellular resolution. This method was validated by series of control experiments, establishing that protoplast isolation and cell sorting procedures did not greatly alter endogenous CK levels. The MS-based method facilitated the quantification of all the well known CK isoprenoid metabolites in four different transgenic Arabidopsis thaliana lines expressing GFP in specific cell populations within the primary root apex. Our results revealed the presence of a CK gradient within the Arabidopsis root tip, with a concentration maximum in the lateral root cap, columella, columella initials, and quiescent center cells. This distribution, when compared with previously published auxin gradients, implies that the well known antagonistic interactions between the two hormone groups are cell type specific.

Indexed as

ArabidopsisBiological TransportCell SeparationCytokininsFlow CytometryGreen Fluorescent ProteinsIndoleacetic AcidsMeristemMetabolomeMiniaturizationOrgan SpecificityPlant RootsProtoplastsSolid Phase ExtractionCytokininsGreen Fluorescent ProteinsIndoleacetic Acids

Identifiers

PMID26152699
PMCPMC4531351
OpenAlexW2106289804

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.