Evidence map›Paper›PMID 26151661›Full record

ArticleAnalytical chemistry2015

Isotope-Coded Labeling for Accelerated Protein Interaction Profiling Using MS.

John D Venable, Caitlin Steckler, Weijia Ou, Jan Grünewald, Sanjay Agarwalla, Ansgar Brock

Abstract read
In one paragraph

Article in Analytical chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

John D Venable†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.
Caitlin Steckler†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.
Weijia Ou†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.
Jan Grünewald†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.
Sanjay Agarwalla†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.
Ansgar Brock†Genomics Institute of the Novartis Research Foundation, San Diego, California 92121, United States.

Funding

Structure Determination Core at SSRLU54GM094586 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI WOOLEY, JOHN C · 2010 to 2014
$40.1M
NIGMS NIH HHS U54 GM094586
6 · The paper itself

Abstract

Protein interaction surface mapping using MS is widely applied but comparatively resource-intensive. Here, a workflow adaptation for use of isotope-coded tandem mass tags for the purpose is reported. The key benefit of improved throughput derived from sample acquisition multiplexing and automated analysis is shown to be maintained in the new application. Mapping of the epitopes of two monoclonal antibodies on their respective targets serves to illustrate the novel approach. We conclude that the approach enables mapping of interactions by MS at significantly larger scales than hereto possible.

Indexed as

Gas Chromatography-Mass SpectrometryBinding SitesIsotope LabelingModels, MolecularProtein Interaction MappingProteinsProtein Structure, SecondaryProteins

Identifiers

PMID26151661
PMCPMC4535432

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.