Evidence map›Paper›PMID 26151448›Full record

ArticlePloS one2015

Deletion of Plasmodium falciparum Histidine-Rich Protein 2 (pfhrp2) and Histidine-Rich Protein 3 (pfhrp3) Genes in Colombian Parasites.

Claribel Murillo Solano, Sheila Akinyi Okoth, Joseph F Abdallah, Zuleima Pava, Erika Dorado, Sandra Incardona, Curtis S Huber, Alexandre Macedo de Oliveira, David Bell, Venkatachalam Udhayakumar and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 57 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed, 4 pooled it
9.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 4 syntheses or guidelines pooled it, 94 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Prevalence ofBulletin of the World Health Organization · 2020
    Pooled it
  4. Pooled it
  5. Article
  6. Review
  7. Article
  8. Local variability inMalariaWorld journal · 2026
    Article
  9. Article
  10. High Prevalence ofThe Canadian journal of infectious diseases & medical microbiology = Journal canadien des maladies infectieuses et de la microbiologie medicale · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. High Frequency of Deletions in theTropical medicine and infectious disease · 2024
    Article
  15. Article
  16. Aptamer-Based Technologies for Parasite Detection.Sensors (Basel, Switzerland) · 2023
    Review
  17. Low frequency ofFrontiers in epidemiology · 2023
    Article
  18. Assessment ofJournal of parasitic diseases : official organ of the Indian Society for Parasitology · 2022
    Article
  19. High-throughputeLife · 2022
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 7 institutions in 3 countries.

Claribel Murillo SolanoCentro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Carrera 125 #19-225 Av., La Maria, Cali, Colombia.
Sheila Akinyi OkothMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America; Atlanta Research and Education Foundation, Decatur, Georgia, United States of America.
Joseph F AbdallahMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America.
Zuleima PavaCentro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Carrera 125 #19-225 Av., La Maria, Cali, Colombia.
Erika DoradoCentro Internacional de Entrenamiento e Investigaciones Medicas (CIDEIM), Carrera 125 #19-225 Av., La Maria, Cali, Colombia.
Sandra IncardonaFoundation for Innovative New Diagnostics, Chemin des Mines, 1202, Geneva, Switzerland.
Curtis S HuberMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America.
Alexandre Macedo de OliveiraMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America.
David BellFoundation for Innovative New Diagnostics, Chemin des Mines, 1202, Geneva, Switzerland; Global Good Fund/Intellectual Ventures Lab, 1807 132nd Ave NE, Bellevue, Washington, United States of America.
Venkatachalam UdhayakumarMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America.
John W BarnwellMalaria Branch, Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, 1600 Clifton Road, Atlanta, Georgia, United States of America.
Centro Internacional de Entrenamiento e Investigaciones Medicas · COCenter for Global Health · USDivision of Parasitic Diseases and Malaria · USAtlanta Research and Education Foundation · USBellevue Hospital Center · USCenters for Disease Control and Prevention · USFoundation for Innovative New Diagnostics · CH

Funding

Vector/Host-Parasite Interface of Leishmaniasis in ColombiaD43TW006589 · FIC · YALE UNIVERSITY · PI GORE SARAVIA, NANCY, TSCHUDI, CHRISTIAN · 2003 to 2024
$4.3M
FIC NIH HHS D43 TW006589
6 · The paper itself

Abstract

A number of studies have analyzed the performance of malaria rapid diagnostic tests (RDTs) in Colombia with discrepancies in performance being attributed to a combination of factors such as parasite levels, interpretation of RDT results and/or the handling and storage of RDT kits. However, some of the inconsistencies observed with results from Plasmodium falciparum histidine-rich protein 2 (PfHRP2)-based RDTs could also be explained by the deletion of the gene that encodes the protein, pfhrp2, and its structural homolog, pfhrp3, in some parasite isolates. Given that pfhrp2- and pfhrp3-negative P. falciparum isolates have been detected in the neighboring Peruvian and Brazilian Amazon regions, we hypothesized that parasites with deletions of pfhrp2 and pfhrp3 may also be present in Colombia. In this study we tested 100 historical samples collected between 1999 and 2009 from six Departments in Colombia for the presence of pfhrp2, pfhrp3 and their flanking genes. Seven neutral microsatellites were also used to determine the genetic background of these parasites. In total 18 of 100 parasite isolates were found to have deleted pfhrp2, a majority of which (14 of 18) were collected from Amazonas Department, which borders Peru and Brazil. pfhrp3 deletions were found in 52 of the 100 samples collected from all regions of the country. pfhrp2 flanking genes PF3D7_0831900 and PF3D7_0831700 were deleted in 22 of 100 and in 1 of 100 samples, respectively. pfhrp3 flanking genes PF3D7_1372100 and PF3D7_1372400 were missing in 55 of 100 and in 57 of 100 samples. Structure analysis of microsatellite data indicated that Colombian samples tested in this study belonged to four clusters and they segregated mostly based on their geographic region. Most of the pfhrp2-deleted parasites were assigned to a single cluster and originated from Amazonas Department although a few pfhrp2-negative parasites originated from the other three clusters. The presence of a high proportion of pfhrp2-negative isolates in the Colombian Amazon may have implications for the use of PfHRP2-based RDTs in the region and may explain inconsistencies observed when PfHRP2-based tests and assays are performed.

Indexed as

Gene DeletionAntigens, ProtozoanColombiaDiagnostic Tests, RoutineDNA, ProtozoanElectrophoresis, Agar GelGenotypeGeographyHumansMalaria, FalciparumPlasmodium falciparumPolymerase Chain ReactionProtozoan ProteinsAntigens, ProtozoanDNA, ProtozoanHRP-2 antigen, Plasmodium falciparumHRP3 protein, Plasmodium falciparumProtozoan Proteins

Identifiers

PMID26151448
PMCPMC4494814
OpenAlexW2312081890

What OpenQuestion holds

Textmetadata
LicenceCC0
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.