ReviewFrontiers in genetics2015
Using linkage maps to correct and scaffold de novo genome assemblies: methods, challenges, and computational tools.
Review in Frontiers in genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 73 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
73 citing papers in PubMed.
- Estimating recombination fraction via Pearson correlation.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2026Article
- QTL mapping and candidate gene identification of the full flowering date trait in olive trees (Olea Europaea L.).BMC plant biology · 2025Article
- Chromosome-level genome assembly and Oligo-FISH confirmation of chromosome models for the Tasmanian snow skink Carinascincus ocellatus (Scincidae, Eugongylinae).BMC biology · 2025Article
- The impact of telomere-to-telomere genome assembly in the plant pan-genomics era.Breeding science · 2025Article
- A high-density linkage map reveals broad- and fine-scale sex differences in recombination in the hihi (stitchbird; Notiomystis cincta).Heredity · 2024Article
- High-density linkage to physical mapping in a unique Tall × Dwarf coconut (Frontiers in plant science · 2024Article
- Telomere-to-telomere genome assembly of an allotetraploid pernicious weed, Echinochloa phyllopogon.DNA research : an international journal for rapid publication of reports on genes and genomes · 2023Article
- Chromosome-level assembly of the Rangifer tarandus genome and validation of cervid and bovid evolution insights.BMC genomics · 2023Article
- High-density linkage mapping and genetic dissection of resistance to broomrape (Frontiers in plant science · 2023Article
- Smooth Descent: A ploidy-aware algorithm to improve linkage mapping in the presence of genotyping errors.Frontiers in genetics · 2023Article
- Evaluating Illumina-, Nanopore-, and PacBio-based genome assembly strategies with the bald notothen, Trematomus borchgrevinki.G3 (Bethesda, Md.) · 2022Article
- The first high-density genetic map of common cockle (Cerastoderma edule) reveals a major QTL controlling shell color variation.Scientific reports · 2022Article
- Article
- Integrating Genetic and Chromosome Maps ofInternational journal of molecular sciences · 2022Article
- A Novel Strategy to Reveal the Landscape of Crossovers in an F1 Hybrid Population ofPlants (Basel, Switzerland) · 2022Article
- De novo chromosome level assembly of a plant genome from long read sequence data.The Plant journal : for cell and molecular biology · 2022Article
- Efficient construction of a linkage map and haplotypes for Mentha suaveolens using sequence capture.G3 (Bethesda, Md.) · 2021Article
- Article
- The Assembled and Annotated Genome of the Fairy-Ring Fungus Marasmius oreades.Genome biology and evolution · 2021Article
- The Diversity of Plant Sex Chromosomes Highlighted through Advances in Genome Sequencing.Genes · 2021Review
13 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
1 author.
Funding
Abstract
Modern high-throughput DNA sequencing has made it possible to inexpensively produce genome sequences, but in practice many of these draft genomes are fragmented and incomplete. Genetic linkage maps based on recombination rates between physical markers have been used in biology for over 100 years and a linkage map, when paired with a de novo sequencing project, can resolve mis-assemblies and anchor chromosome-scale sequences. Here, I summarize the methodology behind integrating de novo assemblies and genetic linkage maps, outline the current challenges, review the available software tools, and discuss new mapping technologies.
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