Evidence map›Paper›PMID 26150509›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2015

Conserved regulatory mechanism controls the development of cells with rooting functions in land plants.

Thomas Ho Yuen Tam, Bruno Catarino, Liam Dolan

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
19.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 89 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. COE2 Is Required for the Root Foraging Response to Nitrogen Limitation.International journal of molecular sciences · 2022
    Article
  11. Article
  12. Review
  13. Auxin-Environment Integration in Growth Responses to Forage for Resources.Cold Spring Harbor perspectives in biology · 2021
    Review
  14. Auxin Biology in Bryophyta: A Simple Platform with Versatile Functions.Cold Spring Harbor perspectives in biology · 2021
    Review
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Changing expressions: a hypothesis for the origin of the vascular plant life cycle.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Thomas Ho Yuen TamDepartment of Plant Sciences, University of Oxford, Oxford OX1 3RB, United Kingdom.
Bruno CatarinoDepartment of Plant Sciences, University of Oxford, Oxford OX1 3RB, United Kingdom.
Liam DolanDepartment of Plant Sciences, University of Oxford, Oxford OX1 3RB, United Kingdom liam.dolan@plants.ox.ac.uk.
University of Oxford · GB

Funding

Biotechnology and Biological Sciences Research Council BB/G019894/2
6 · The paper itself

Abstract

Land plants develop filamentous cells-root hairs, rhizoids, and caulonemata-at the interface with the soil. Members of the group XI basic helix-loop-helix (bHLH) transcription factors encoded by LOTUS JAPONICUS ROOTHAIRLESS1-LIKE (LRL) genes positively regulate the development of root hairs in the angiosperms Lotus japonicus, Arabidopsis thaliana, and rice (Oryza sativa). Here we show that auxin promotes rhizoid and caulonema development by positively regulating the expression of PpLRL1 and PpLRL2, the two LRL genes in the Physcomitrella patens genome. Although the group VIII bHLH proteins, AtROOT HAIR DEFECTIVE6 and AtROOT HAIR DEFECTIVE SIX-LIKE1, promote root-hair development by positively regulating the expression of AtLRL3 in A. thaliana, LRL genes promote rhizoid development independently of PpROOT HAIR DEFECTIVE SIX-LIKE1 and PpROOT HAIR DEFECITVE SIX-LIKE2 (PpRSL1 and PpRSL2) gene function in P. patens. Together, these data demonstrate that both LRL and RSL genes are components of an ancient auxin-regulated gene network that controls the development of tip-growing cells with rooting functions among most extant land plants. Although this network has diverged in the moss and the angiosperm lineages, our data demonstrate that the core network acted in the last common ancestor of the mosses and angiosperms that existed sometime before 420 million years ago.

Indexed as

Conserved SequenceGene Expression Regulation, PlantAmino Acid SequenceBasic Helix-Loop-Helix ProteinsBayes TheoremBryopsidaGenes, PlantGlucuronidaseIndoleacetic AcidsLikelihood FunctionsModels, BiologicalMolecular Sequence DataMutationPhenotypePhosphatesPhylogenyBasic Helix-Loop-Helix ProteinsGlucuronidaseIndoleacetic AcidsPhosphatesPlant ProteinsauxinbHLHevolutionrhizoidsroot hairs

Identifiers

PMID26150509
PMCPMC4517282
OpenAlexW2129328028

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.