Evidence map›Paper›PMID 26150458›Full record

ArticleApplied and environmental microbiology2015

Microbial Toluene Removal in Hypoxic Model Constructed Wetlands Occurs Predominantly via the Ring Monooxygenation Pathway.

P M Martínez-Lavanchy, Z Chen, V Lünsmann, V Marin-Cevada, R Vilchez-Vargas, D H Pieper, N Reiche, U Kappelmeyer, V Imparato, H Junca and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.4field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 47 citations in OpenAlex.

  1. Review
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  3. Isolation ofFrontiers in microbiology · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 2 countries.

P M Martínez-LavanchyDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany Department of Environmental Microbiology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
Z ChenDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
V LünsmannDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany Department of Proteomics, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
V Marin-CevadaDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
R Vilchez-VargasMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
D H PieperMicrobial Interactions and Processes Research Group, Helmholtz Centre for Infection Research, Braunschweig, Germany.
N ReicheDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
U KappelmeyerDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
V ImparatoDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
H JuncaRG Microbial Ecology: Metabolism, Genomics, and Evolution/CorpoGen, Bogota, Colombia.
I NijenhuisDepartment of Isotope Biogeochemistry, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
J A MüllerDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
P KuschkDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany.
H J HeipieperDepartment of Environmental Biotechnology, Helmholtz Centre for Environmental Research-UFZ, Leipzig, Germany hermann.heipieper@ufz.de.
Helmholtz Centre for Environmental Research · DEHelmholtz Centre for Infection Research · DEMicrobiomas Foundation · CO

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the present study, microbial toluene degradation in controlled constructed wetland model systems, planted fixed-bed reactors (PFRs), was queried with DNA-based methods in combination with stable isotope fractionation analysis and characterization of toluene-degrading microbial isolates. Two PFR replicates were operated with toluene as the sole external carbon and electron source for 2 years. The bulk redox conditions in these systems were hypoxic to anoxic. The autochthonous bacterial communities, as analyzed by Illumina sequencing of 16S rRNA gene amplicons, were mainly comprised of the families Xanthomonadaceae, Comamonadaceae, and Burkholderiaceae, plus Rhodospirillaceae in one of the PFR replicates. DNA microarray analyses of the catabolic potentials for aromatic compound degradation suggested the presence of the ring monooxygenation pathway in both systems, as well as the anaerobic toluene pathway in the PFR replicate with a high abundance of Rhodospirillaceae. The presence of catabolic genes encoding the ring monooxygenation pathway was verified by quantitative PCR analysis, utilizing the obtained toluene-degrading isolates as references. Stable isotope fractionation analysis showed low-level of carbon fractionation and only minimal hydrogen fractionation in both PFRs, which matches the fractionation signatures of monooxygenation and dioxygenation. In combination with the results of the DNA-based analyses, this suggests that toluene degradation occurs predominantly via ring monooxygenation in the PFRs.

Indexed as

Environmental MicrobiologyMetabolic Networks and PathwaysAnaerobiosisBacteriaBiotaBiotransformationCarbonCluster AnalysisDNA, BacterialDNA, RibosomalEnvironmental PollutantsHydrogenMicroarray AnalysisMixed Function OxygenasesMolecular Sequence DataOxidation-ReductionCarbonDNA, BacterialDNA, RibosomalEnvironmental PollutantsHydrogenMixed Function OxygenasesRNA, Ribosomal, 16SToluene

Identifiers

PMID26150458
PMCPMC4542231
OpenAlexW1881367962

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.