Evidence map›Paper›PMID 26150418›Full record

ArticleNucleic acids research2015

UV induced ubiquitination of the yeast Rad4-Rad23 complex promotes survival by regulating cellular dNTP pools.

Zheng Zhou, Neil Humphryes, Patrick van Eijk, Raymond Waters, Shirong Yu, Rolf Kraehenbuehl, Edgar Hartsuiker, Simon H Reed

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
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  4. Comparative Transcriptome Analyses ofFrontiers in microbiology · 2020
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  5. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Zheng ZhouInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK College of Biology, Hunan University, Changsha 410082, China.
Neil HumphryesInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK New York University Department of Biology,1009 Silver Center, 100 Washington Square East, NY, USA.
Patrick van EijkInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK.
Raymond WatersInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK.
Shirong YuInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK Cambridge Epigenetix, Jonas Webb Building, Babraham Campus, Cambridge, CB22 3AT, UK.
Rolf KraehenbuehlNorth West Cancer Research Institute, Bangor University, Brambell Building, Bangor, LL57 2UW, UK.
Edgar HartsuikerNorth West Cancer Research Institute, Bangor University, Brambell Building, Bangor, LL57 2UW, UK.
Simon H ReedInstitute of Cancer & Genetics, School of Medicine, Cardiff University, Heath Park, Cardiff, CF14 4XN, UK reedsh1@cardiff.ac.uk.
Cardiff University · GBBangor University · GBHunan University · CNNew York University · US

Funding

Cancer Research UK 11809Cancer Research UK 12340Medical Research Council G0400113Medical Research Council MR/K000926/1
6 · The paper itself

Abstract

Regulating gene expression programmes is a central facet of the DNA damage response. The Dun1 kinase protein controls expression of many DNA damage induced genes, including the ribonucleotide reductase genes, which regulate cellular dNTP pools. Using a combination of gene expression profiling and chromatin immunoprecipitation, we demonstrate that in the absence of DNA damage the yeast Rad4-Rad23 nucleotide excision repair complex binds to the promoters of certain DNA damage response genes including DUN1, inhibiting their expression. UV radiation promotes the loss of occupancy of the Rad4-Rad23 complex from the regulatory regions of these genes, enabling their induction and thereby controlling the production of dNTPs. We demonstrate that this regulatory mechanism, which is dependent on the ubiquitination of Rad4 by the GG-NER E3 ligase, promotes UV survival in yeast cells. These results support an unanticipated regulatory mechanism that integrates ubiquitination of NER DNA repair factors with the regulation of the transcriptional response controlling dNTP production and cellular survival after UV damage.

Indexed as

DNA RepairGene Expression Regulation, FungalUbiquitinationUltraviolet RaysDeoxyribonucleotidesDNA-Binding ProteinsDNA DamageFungal ProteinsPromoter Regions, GeneticTranscription, GeneticUbiquitin-Protein LigasesYeastsDeoxyribonucleotidesDNA-Binding ProteinsFungal ProteinsUbiquitin-Protein Ligases

Identifiers

PMID26150418
PMCPMC4551923
OpenAlexW1912912769

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.