Evidence map›Paper›PMID 26150107›Full record

ArticleScientific reports2015

Two short sequences in OsNAR2.1 promoter are necessary for fully activating the nitrate induced gene expression in rice roots.

Xiaoqin Liu, Huimin Feng, Daimin Huang, Miaoquan Song, Xiaorong Fan, Guohua Xu

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 9 citations in OpenAlex.

  1. Frontiers in plant science · 2022
    Article
  2. Article
  3. Co-Overexpression ofFrontiers in plant science · 2020
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Xiaoqin LiuState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Huimin FengState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Daimin HuangState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Miaoquan SongState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Xiaorong FanState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Guohua XuState Key Laboratory of Crop Genetics and Germplasm Enhancement.
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nitrate is an essential nitrogen source and serves as a signal to control growth and gene expression in plants. In rice, OsNAR2.1 is an essential partner of multiple OsNRT2 nitrate transporters for nitrate uptake over low and high concentration range. Previously, we have reported that -311 bp upstream fragment from the translational start site in the promoter of OsNAR2.1 gene is the nitrate responsive region. To identify the cis-acting DNA elements necessary for nitrate induced gene expression, we detected the expression of beta-glucuronidase (GUS) reporter in the transgenic rice driven by the OsNAR2.1 promoter with different lengths and site mutations of the 311 bp region. We found that -129 to -1 bp region is necessary for the nitrate-induced full activation of OsNAR2.1. Besides, the site mutations showed that the 20 bp fragment between -191 and -172 bp contains an enhancer binding site necessary to fully drive the OsNAR2.1 expression. Part of the 20 bp fragment is commonly presented in the sequences of different promoters of both the nitrate induced NAR2 genes and nitrite reductase NIR1 genes from various higher plants. These findings thus reveal the presence of conserved cis-acting element for mediating nitrate responses in plants.

Indexed as

Anion Transport ProteinsBase SequenceGene Expression Regulation, PlantMutationNitratesNitrate TransportersOryzaPlant ProteinsPlant RootsPlants, Genetically ModifiedPromoter Regions, GeneticRegulatory Sequences, Nucleic AcidAnion Transport ProteinsNitratesNitrate TransportersPlant Proteins

Identifiers

PMID26150107
PMCPMC4493634
OpenAlexW2176159864

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.