Evidence map›Paper›PMID 26149997›Full record

ArticleAntimicrobial agents and chemotherapy2015

Hydrolysis of clavulanate by Mycobacterium tuberculosis β-lactamase BlaC harboring a canonical SDN motif.

Daria Soroka, Inès Li de la Sierra-Gallay, Vincent Dubée, Sébastien Triboulet, Herman van Tilbeurgh, Fabrice Compain, Lluis Ballell, David Barros, Jean-Luc Mainardi, Jean-Emmanuel Hugonnet and 1 more

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

  1. Article
  2. Article
  3. Antimicrobial agents and chemotherapy · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Repurposing β-Lactams for the Treatment ofAntibiotics (Basel, Switzerland) · 2023
    Article
  8. Are the Newer Carbapenems of Any Value against Tuberculosis.Antibiotics (Basel, Switzerland) · 2022
    Article
  9. The roles of highly conserved, non-catalytic residues in class A β-lactamases.Protein science : a publication of the Protein Society · 2022
    Article
  10. Anti-tuberculosis drug developmentFrontiers in microbiology · 2022
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Daria SorokaINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Open Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium.
Inès Li de la Sierra-GallayFonction et Architecture des Assemblages Macromoléculaires, Institut de Biologie Intégrative de la Cellule, Université Paris-Sud, UMR 9198, Orsay, France.
Vincent DubéeINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Open Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium.
Sébastien TribouletINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Open Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium.
Herman van TilbeurghFonction et Architecture des Assemblages Macromoléculaires, Institut de Biologie Intégrative de la Cellule, Université Paris-Sud, UMR 9198, Orsay, France.
Fabrice CompainINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Assistance Publique-Hôpitaux de Paris, Hôpital Européen Georges Pompidou, Paris, France.
Lluis BallellOpen Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium Diseases of the Developing World (DDW), Tres Cantos Medicines Development Campus (TCMDC), GlaxoSmithKline, Tres Cantos, Madrid, Spain.
David BarrosOpen Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium Diseases of the Developing World (DDW), Tres Cantos Medicines Development Campus (TCMDC), GlaxoSmithKline, Tres Cantos, Madrid, Spain.
Jean-Luc MainardiINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Assistance Publique-Hôpitaux de Paris, Hôpital Européen Georges Pompidou, Paris, France.
Jean-Emmanuel HugonnetINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Open Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium jean-emmanuel.hugonnet@crc.jussieu.fr michel.arthur@crc.jussieu.fr.
Michel ArthurINSERM, UMR_S 1138, Centre de Recherche des Cordeliers, LRMA Equipe 12, Paris, France Sorbonne Universités, UPMC Univ Paris 06, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Université Paris Descartes, Sorbonne Paris Cité, UMR_S 1138, Centre de Recherche des Cordeliers, Paris, France Open Collaborative Model for Tuberculosis Lead Optimisation (ORCHID) Consortium jean-emmanuel.hugonnet@crc.jussieu.fr michel.arthur@crc.jussieu.fr.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Combinations of β-lactams with clavulanate are currently being investigated for tuberculosis treatment. Since Mycobacterium tuberculosis produces a broad spectrum β-lactamase, BlaC, the success of this approach could be compromised by the emergence of clavulanate-resistant variants, as observed for inhibitor-resistant TEM variants in enterobacteria. Previous analyses based on site-directed mutagenesis of BlaC have led to the conclusion that this risk was limited. Here, we used a different approach based on determination of the crystal structure of β-lactamase BlaMAb of Mycobacterium abscessus, which efficiently hydrolyzes clavulanate. Comparison of BlaMAb and BlaC allowed for structure-assisted site-directed mutagenesis of BlaC and identification of the G(132)N substitution that was sufficient to switch the interaction of BlaC with clavulanate from irreversible inactivation to efficient hydrolysis. The substitution, which restored the canonical SDN motif (SDG→SDN), allowed for efficient hydrolysis of clavulanate, with a more than 10(4)-fold increase in k cat (0.41 s(-1)), without affecting the hydrolysis of other β-lactams. Mass spectrometry revealed that acylation of BlaC and of its G(132)N variant by clavulanate follows similar paths, involving sequential formation of two acylenzymes. Decarboxylation of the first acylenzyme results in a stable secondary acylenzyme in BlaC, whereas hydrolysis occurs in the G(132)N variant. The SDN/SDG polymorphism defines two mycobacterial lineages comprising rapidly and slowly growing species, respectively. Together, these results suggest that the efficacy of β-lactam-clavulanate combinations may be limited by the emergence of resistance. β-Lactams active without clavulanate, such as faropenem, should be prioritized for the development of new therapies.

Indexed as

beta-Lactamasesbeta-Lactam Resistancebeta-LactamsClavulanic AcidMicrobial Sensitivity TestsMycobacterium tuberculosisbeta-Lactamasesbeta-LactamsClavulanic Acid

Identifiers

PMID26149997
PMCPMC4538473

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