Evidence map›Paper›PMID 26147656›Full record

ArticleCytoskeleton (Hoboken, N.J.)2015

Combinatorial genetic analysis of a network of actin disassembly-promoting factors.

Casey A Ydenberg, Adam Johnston, Jaclyn Weinstein, Danielle Bellavance, Silvia Jansen, Bruce L Goode

Open access · hybridAbstract read
In one paragraph

Article in Cytoskeleton (Hoboken, N.J.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 19 citations in OpenAlex.

  1. Article
  2. Mechanisms of actin disassembly and turnover.The Journal of cell biology · 2023
    Review
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Genetically inspired in vitro reconstitution ofMolecular biology of the cell · 2020
    Article
  9. Review
  10. Article
  11. Article
  12. GMF as an Actin Network Remodeling Factor.Trends in cell biology · 2018
    Review
  13. Article
  14. Review
  15. Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Casey A YdenbergDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Adam JohnstonDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Jaclyn WeinsteinDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Danielle BellavanceDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Silvia JansenDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Bruce L GoodeDepartment of Biology, Rosenstiel Basic Medical Science Research Center, Brandeis University, Waltham, Massachusetts, 02454.
Brandeis University · US

Funding

MECHNISMS REGULATING ACTIN ASSEMBLYR01GM063691 · NIGMS · BRANDEIS UNIVERSITY · PI GOODE, BRUCE L · 2002 to 2019
$7.5M
GENETIC AND BIOCHEMICAL MECHANISMS OF REGULATIONT32GM007122 · NIGMS · BRANDEIS UNIVERSITY · PI LOVETT, SUSAN THOMAS · 1985 to 2020
$7.5M
NIGMS NIH HHS R01 GM063691NIGMS NIH HHS T32 GM007122
6 · The paper itself

Abstract

The patterning of actin cytoskeleton structures in vivo is a product of spatially and temporally regulated polymer assembly balanced by polymer disassembly. While in recent years our understanding of actin assembly mechanisms has grown immensely, our knowledge of actin disassembly machinery and mechanisms has remained comparatively sparse. Saccharomyces cerevisiae is an ideal system to tackle this problem, both because of its amenabilities to genetic manipulation and live-cell imaging and because only a single gene encodes each of the core disassembly factors: cofilin (COF1), Srv2/CAP (SRV2), Aip1 (AIP1), GMF (GMF1/AIM7), coronin (CRN1), and twinfilin (TWF1). Among these six factors, only the functions of cofilin are essential and have been well defined. Here, we investigated the functions of the nonessential actin disassembly factors by performing genetic and live-cell imaging analyses on a combinatorial set of isogenic single, double, triple, and quadruple mutants in S. cerevisiae. Our results show that each disassembly factor makes an important contribution to cell viability, actin organization, and endocytosis. Further, our data reveal new relationships among these factors, providing insights into how they work together to orchestrate actin turnover. Finally, we observe specific combinations of mutations that are lethal, e.g., srv2Δ aip1Δ and srv2Δ crn1Δ twf1Δ, demonstrating that while cofilin is essential, it is not sufficient in vivo, and that combinations of the other disassembly factors perform vital functions.

Indexed as

Actin CytoskeletonActin Depolymerizing FactorsActinsBlotting, WesternGene Knockout TechniquesSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsActin Depolymerizing FactorsActinsSaccharomyces cerevisiae Proteinsactinactin disassemblyAip1cell polarityCofilinCoroninendocytosisGMFSrv2/CAP1Twinfilinyeast

Identifiers

PMID26147656
PMCPMC5014199
OpenAlexW1547721961

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.