Evidence map›Paper›PMID 26144553›Full record

ArticleNature communications2015

The GATA transcription factor GtaC regulates early developmental gene expression dynamics in Dictyostelium.

Balaji Santhanam, Huaqing Cai, Peter N Devreotes, Gad Shaulsky, Mariko Katoh-Kurasawa

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  9. Transcriptional milestones inGenome research · 2021
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  13. Article
  14. The Long Noncoding RNA Transcriptome ofG3 (Bethesda, Md.) · 2017
    Article
  15. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Balaji Santhanam1] Graduate Program in Structural and Computational Biology and Molecular Biophysics, Baylor College of Medicine, Houston, Texas 77030, USA [2] Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Huaqing CaiDepartment of Cell Biology, School of Medicine, Johns Hopkins University, Baltimore, Maryland 21205, USA.
Peter N DevreotesDepartment of Cell Biology, School of Medicine, Johns Hopkins University, Baltimore, Maryland 21205, USA.
Gad ShaulskyDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.ORCID 0000000205320551
Mariko Katoh-KurasawaDepartment of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas 77030, USA.
Baylor College of Medicine · USJohns Hopkins University · US

Funding

PROJECT III - Computational Analysis of Phenotypes andP01HD039691 · NICHD · BAYLOR COLLEGE OF MEDICINE · PI KUSPA, ADAM, SHAULSKY, GAD · 2001 to 2016
$14.4M
Excitable Networks in Directed Cell MigrationR35GM118177 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI Peter N Devreotes · 2016 to 2026
$12.1M
Temporal and Spatial Signaling in ChemotaxisR01GM034933 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI DEVREOTES, PETER N · 1987 to 2015
$8.8M
SIGNAL TRANSDUCTION AND DICTYOSTELIUM DEVELOPMENTR01GM028007 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI DEVREOTES, PETER N · 1985 to 2004
$2.4M
NICHD NIH HHS P01 HD039691NICHD NIH HHS P01 HD39691NIGMS NIH HHS R01 GM028007NIGMS NIH HHS R01 GM034933NIGMS NIH HHS R01 GM28007NIGMS NIH HHS R01 GM34933NIGMS NIH HHS R35 GM118177
6 · The paper itself

Abstract

In many systems, including the social amoeba Dictyostelium discoideum, development is often marked by dynamic morphological and transcriptional changes orchestrated by key transcription factors. However, efforts to examine sequential genome-wide changes of gene regulation in developmental processes have been fairly limited. Here we report the developmental regulatory dynamics of GtaC, a GATA-type zinc-finger transcription factor, through the analyses of serial ChIP- and RNA-sequencing data. GtaC is essential for developmental progression, decoding extracellular cAMP pulses during early development and may play a role in mediating cell-type differentiation at later stages. We find that GtaC exhibits temporally distinctive DNA-binding patterns concordant with each developmental stage. We identify direct GtaC targets and observe cotemporaneous GtaC-binding and developmental expression regulation. Our results suggest that GtaC regulates multiple physiological processes as Dictyostelium transitions from a group of unicellular amoebae to an integrated multicellular organism.

Indexed as

DictyosteliumDNAGene Expression Regulation, DevelopmentalProtein BindingProtozoan ProteinsRNARNA, ProtozoanTranscriptomeDNAProtozoan ProteinsRNARNA, Protozoan

Identifiers

PMID26144553
PMCPMC4506546
OpenAlexW2256173679

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.