Evidence map›Paper›PMID 26144253›Full record

ArticleNature communications2015

Cryo-EM structure of the bacteriophage T4 portal protein assembly at near-atomic resolution.

Lei Sun, Xinzheng Zhang, Song Gao, Prashant A Rao, Victor Padilla-Sanchez, Zhenguo Chen, Siyang Sun, Ye Xiang, Sriram Subramaniam, Venigalla B Rao and 1 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 81 papers.

0numbers the graph read from it
0cells of the map it votes in
81citing papers in PubMed
10.9field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

81 citing papers in PubMed, 104 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Bacteriophage-based strategies for biocontrol and treatment of infectious diseases.Computational and structural biotechnology journal · 2025
    Review
  16. Article
  17. Review
  18. Review
  19. Article
  20. Article

21 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Lei SunDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Xinzheng ZhangDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Song GaoDepartment of Biology, The Catholic University of America, 620 Michigan Ave. N.E., Washington, DC 20064, USA.
Prashant A RaoNational Cancer Institute, National Institutes of Health, 50 South Drive, Bldg. 50 Room 4306, Bethesda, Maryland 20892, USA.
Victor Padilla-SanchezDepartment of Biology, The Catholic University of America, 620 Michigan Ave. N.E., Washington, DC 20064, USA.
Zhenguo ChenDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Siyang SunDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Ye XiangDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Sriram SubramaniamNational Cancer Institute, National Institutes of Health, 50 South Drive, Bldg. 50 Room 4306, Bethesda, Maryland 20892, USA.
Venigalla B RaoDepartment of Biology, The Catholic University of America, 620 Michigan Ave. N.E., Washington, DC 20064, USA.
Michael G RossmannDepartment of Biological Sciences, Purdue University, 240S. Martin Jischke Drive, West Lafayette, Indiana 47907-2032, USA.
Purdue University West Lafayette · USNational Institutes of Health · USUniversity of America · USCatholic University of America · US

Funding

Structural studies of bacteriophage T4 and their potential medical applicationsR01AI081726 · NIAID · PURDUE UNIVERSITY · PI KUHN, RICHARD J., RAO, VENIGALLA B. · 2010 to 2019
$6.2M
Phase T4 Head Assembly and Initiation of InfectionR01AI011676 · NIAID · UNIVERSITY OF MARYLAND BALTIMORE · PI BLACK, LINDSAY W · 1985 to 2013
$4.1M
STRUCTURE OF A SMALL SPHERICAL VIRUSR01AI011219 · NIAID · PURDUE UNIVERSITY WEST LAFAYETTE · PI KUHN, RICHARD J. · 1985 to 2020
$2.4M
HIGH-END CRYOEM INSTRUMENT FOR UCLA ELECTRON IMAGING CTR FOR NANOMACHINES: AIDSS10RR023057 · NCRR · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2006 to 2006
$1.6M
Structural studies of bacteriophage T4 and their potential medical applicationsR56AI081726 · NIAID · PURDUE UNIVERSITY · PI ROSSMANN, MICHAEL G · 2009 to 2009
$600k
Direct Detection Device for atomic resolution cryoEM of macromolecular complexesS10OD018111 · OD · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI ZHOU, Z HONG · 2014 to 2014
$598k
NCRR NIH HHS 1S10RR23057NCRR NIH HHS S10 RR023057NIAID NIH HHS AI 081726NIAID NIH HHS R01 AI011219NIAID NIH HHS R01 AI011676NIAID NIH HHS R01 AI081726NIAID NIH HHS R56 AI081726NIH HHS 1S10OD018111NIH HHS S10 OD018111
6 · The paper itself

Abstract

The structure and assembly of bacteriophage T4 has been extensively studied. However, the detailed structure of the portal protein remained unknown. Here we report the structure of the bacteriophage T4 portal assembly, gene product 20 (gp20), determined by cryo-electron microscopy (cryo-EM) to 3.6 Å resolution. In addition, analysis of a 10 Å resolution cryo-EM map of an empty prolate T4 head shows how the dodecameric portal assembly interacts with the capsid protein gp23 at the special pentameric vertex. The gp20 structure also verifies that the portal assembly is required for initiating head assembly, for attachment of the packaging motor, and for participation in DNA packaging. Comparison of the Myoviridae T4 portal structure with the known portal structures of φ29, SPP1 and P22, representing Podo- and Siphoviridae, shows that the portal structure probably dates back to a time when self-replicating microorganisms were being established on Earth.

Indexed as

Bacteriophage T4Capsid ProteinsCryoelectron MicroscopyGene Expression Regulation, ViralModels, MolecularProtein ConformationVirus AssemblyCapsid Proteinsgp20 protein, bacteriophage T4

Identifiers

PMID26144253
PMCPMC4493910
OpenAlexW815604314

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.