Evidence map›Paper›PMID 26144224›Full record

ArticleActa crystallographica. Section F, Structural biology communications2015

Trace fluorescent labeling for protein crystallization.

Marc Pusey, Jorge Barcena, Michelle Morris, Anuj Singhal, Qunying Yuan, Joseph Ng

Abstract read
In one paragraph

Article in Acta crystallographica. Section F, Structural biology communications, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Inexpensive robotic system for standard and fluorescent imaging of protein crystals.Acta crystallographica. Section F, Structural biology communications · 2019
    Article
  6. Article
  7. Article
  8. Improved protein-crystal identification by using 2,2,2-trichloroethanol as a fluorescence enhancer.Acta crystallographica. Section F, Structural biology communications · 2018
    Article
  9. A low-cost method for visible fluorescence imaging.Acta crystallographica. Section F, Structural biology communications · 2017
    Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Marc PuseyiXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.
Jorge BarcenaiXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.
Michelle MorrisiXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.
Anuj SinghaliXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.
Qunying YuaniXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.
Joseph NgiXpressGenes Inc., 601 Genome Way, Huntsville, AL 35810, USA.

Funding

Fluorescence Intensity-based Scoring of Macromolecule Crystallization PlatesR42GM090453 · NIGMS · IXPRESSGENES, INC. · PI PUSEY, MARC LEE · 2013 to 2014
$744k
Fluorescence Intensity-Based Scoring of Macromolecule Crystallization PlatesR41GM090453 · NIGMS · IXPRESSGENES, INC. · PI PUSEY, MARC LEE · 2010 to 2010
$100k
NIGMS NIH HHS R41 GM090453NIGMS NIH HHS R42 GM090453NIGMS NIH HHS R42GM090453
6 · The paper itself

Abstract

Fluorescence can be a powerful tool to aid in the crystallization of proteins. In the trace-labeling approach, the protein is covalently derivatized with a high-quantum-yield visible-wavelength fluorescent probe. The final probe concentration typically labels ≤0.20% of the protein molecules, which has been shown to not affect the crystal nucleation or diffraction quality. The labeled protein is then used in a plate-screening experiment in the usual manner. As the most densely packed state of the protein is the crystalline form, then crystals show as the brightest objects in the well under fluorescent illumination. A study has been carried out on the effects of trace fluorescent labeling on the screening results obtained compared with nonlabeled protein, and it was found that considering the stochastic nature of the crystal nucleation process the presence of the probe did not affect the outcomes obtained. Other effects are realised when using fluorescence. Crystals are clearly seen even when buried in precipitate. This approach also finds `hidden' leads, in the form of bright spots, with ∼30% of the leads found being optimized to crystals in a single-pass optimization trial. The use of visible fluorescence also enables the selection of colors that bypass interfering substances, and the screening materials do not have to be UV-transparent.

Indexed as

CrystallizationFluorescent DyesMicroscopy, FluorescencePlant ProteinsProteinsStaining and LabelingFluorescent Dyesphaseolin protein, Phaseolus vulgarisPlant ProteinsProteinscrystallizationintensityscreeningtrace fluorescence labeling

Identifiers

PMID26144224
PMCPMC4498700

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.