Evidence map›Paper›PMID 26143254›Full record

ArticlePlant physiology2015

A Universal Positive-Negative Selection System for Gene Targeting in Plants Combining an Antibiotic Resistance Gene and Its Antisense RNA.

Ayako Nishizawa-Yokoi, Satoko Nonaka, Keishi Osakabe, Hiroaki Saika, Seiichi Toki

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
6.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 22 citations in OpenAlex.

  1. Review
  2. Precise genetic engineering withPlant biotechnology (Tokyo, Japan) · 2023
    Article
  3. Article
  4. Review
  5. Genome editing in rice.Rice (New York, N.Y.) · 2020
    Article
  6. Article
  7. Review
  8. Review
  9. Review
  10. Review
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Ayako Nishizawa-YokoiPlant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan (A.N.-Y., S.N., K.O., H.S., S.T.); Center for Collaboration among Agriculture, Industry and Commerce, University of Tokushima, Tokushima 770-8503, Japan (K.O.); and Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan (S.T.).ORCID http://orcid.org/0000-0003-2781-1359
Satoko NonakaPlant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan (A.N.-Y., S.N., K.O., H.S., S.T.); Center for Collaboration among Agriculture, Industry and Commerce, University of Tokushima, Tokushima 770-8503, Japan (K.O.); and Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan (S.T.).
Keishi OsakabePlant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan (A.N.-Y., S.N., K.O., H.S., S.T.); Center for Collaboration among Agriculture, Industry and Commerce, University of Tokushima, Tokushima 770-8503, Japan (K.O.); and Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan (S.T.).
Hiroaki SaikaPlant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan (A.N.-Y., S.N., K.O., H.S., S.T.); Center for Collaboration among Agriculture, Industry and Commerce, University of Tokushima, Tokushima 770-8503, Japan (K.O.); and Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan (S.T.).
Seiichi TokiPlant Genome Engineering Research Unit, National Institute of Agrobiological Sciences, Ibaraki 305-8602, Japan (A.N.-Y., S.N., K.O., H.S., S.T.); Center for Collaboration among Agriculture, Industry and Commerce, University of Tokushima, Tokushima 770-8503, Japan (K.O.); and Kihara Institute for Biological Research, Yokohama City University, Yokohama 244-0813, Japan (S.T.) stoki@affrc.go.jp.ORCID http://orcid.org/0000-0003-0066-6446
Kihara Institute for Biological Research · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gene targeting (GT) is a useful technology for accurate genome engineering in plants. A reproducible approach based on a positive-negative selection system using hygromycin resistance and the diphtheria toxin A subunit gene as positive and negative selection markers, respectively, is now available. However, to date, this selection system has been applied exclusively in rice (Oryza sativa). To establish a universally applicable positive-negative GT system in plants, we designed a selection system using a combination of neomycin phosphotransferaseII (nptII) and an antisense nptII construct. The concomitant transcription of both sense and antisense nptII suppresses significantly the level of expression of the sense nptII gene, and transgenic calli and plants become sensitive to the antibiotic geneticin. In addition, we were able to utilize the sense nptII gene as a positive selection marker and the antisense nptII construct as a negative selection marker for knockout of the endogenous rice genes Waxy and 33-kD globulin through GT, although negative selection with this system is relatively less efficient compared with diphtheria toxin A subunit. The approach developed here, with some additional improvements, could be applied as a universal selection system for the enrichment of GT cells in several plant species.

Indexed as

Genes, PlantGene TargetingAllelesBlotting, SouthernChromosome SegregationDrug Resistance, MicrobialGene Knockout TechniquesGenetic LociGentamicinsOryzaPhenotypePlants, Genetically ModifiedRNA, AntisenseRNA, MessengerTranscription, Geneticantibiotic G 418GentamicinsRNA, AntisenseRNA, Messenger

Identifiers

PMID26143254
PMCPMC4577407
OpenAlexW2099454548

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.