Evidence map›Paper›PMID 26143251›Full record

ArticlePlant physiology2015

HISTONE DEACETYLASE6-Defective Mutants Show Increased Expression and Acetylation of ENHANCER OF TRIPTYCHON AND CAPRICE1 and GLABRA2 with Small But Significant Effects on Root Epidermis Cellular Pattern.

Dong-Xu Li, Wen-Qian Chen, Zhi-Hong Xu, Shu-Nong Bai

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

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  14. Chromatin and Epigenetics.Plant physiology · 2015
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Dong-Xu LiState Key Laboratory of Protein and Plant Gene Research, College of Life Science, Peking University, Beijing 100871, China; andNational Center of Plant Gene Research, Beijing 100871, China.
Wen-Qian ChenState Key Laboratory of Protein and Plant Gene Research, College of Life Science, Peking University, Beijing 100871, China; andNational Center of Plant Gene Research, Beijing 100871, China.
Zhi-Hong XuState Key Laboratory of Protein and Plant Gene Research, College of Life Science, Peking University, Beijing 100871, China; andNational Center of Plant Gene Research, Beijing 100871, China.
Shu-Nong BaiState Key Laboratory of Protein and Plant Gene Research, College of Life Science, Peking University, Beijing 100871, China; andNational Center of Plant Gene Research, Beijing 100871, China shunongb@pku.edu.cn.
State Key Laboratory of Protein and Plant Gene ResearchPeking University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Cellular patterning in the Arabidopsis (Arabidopsis thaliana) root epidermis is dependent on positional information, the transmission of which involves histone acetylation. Here, we report that HISTONE DEACETYLASE6 (HDA6) has significant effects on this cellular patterning. Mutation of HDA6 led to ectopic hair cells in the nonhair positions of root epidermis in Arabidopsis, based on an analysis of paraffin sections stained with Toluidine Blue. While HDA6 was present throughout the root tip, epidermis-specific complementation with HDA6 could rescue the hda6 phenotype. Both transcript levels and expression patterns of ENHANCER OF TRIPTYCHON AND CAPRICE1 (ETC1) and GLABRA2 (GL2) in the root tip were affected in hda6. Consistent with these changes in expression, HDA6 directly bound to the promoter regions of ETC1 and GL2, and acetylation of histone H3 on these promoter regions and acetylation of histone H4 on the ETC1 promoter region was increased in the hda6 mutant. Taken together, these results indicate that HDA6 affects the cellular patterning of Arabidopsis root epidermis through altering the histone acetylation status of ETC1 and GL2 promoters and thereby affects the expression of these two components of the core transcription factor network determining epidermal cell fates. Our findings thus provide new insights into the role of histone acetylation in root epidermis cell patterning.

Indexed as

MutationAcetylationArabidopsisArabidopsis ProteinsDNA-Binding ProteinsGene Expression ProfilingGene Expression Regulation, PlantGreen Fluorescent ProteinsHistone DeacetylasesHomeodomain ProteinsMicroscopy, ConfocalPlant EpidermisPlant RootsPlants, Genetically ModifiedReverse Transcriptase Polymerase Chain ReactionSeedlingsArabidopsis ProteinsAT5G63110 protein, ArabidopsisDNA-Binding ProteinsETC1 protein, ArabidopsisGL2 protein, ArabidopsisGreen Fluorescent ProteinsHistone DeacetylasesHomeodomain Proteins

Identifiers

PMID26143251
PMCPMC4528770
OpenAlexW1901210772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.