Evidence map›Paper›PMID 26143250›Full record

ArticlePlant physiology2015

Histone H2B Monoubiquitination Mediated by HISTONE MONOUBIQUITINATION1 and HISTONE MONOUBIQUITINATION2 Is Involved in Anther Development by Regulating Tapetum Degradation-Related Genes in Rice.

Hong Cao, Xiaoying Li, Zhi Wang, Meng Ding, Yongzhen Sun, Fengqin Dong, Fengying Chen, Li'an Liu, James Doughty, Yong Li and 1 more

Open access · hybridAbstract read
In one paragraph

Article in Plant physiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 61 citations in OpenAlex.

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  10. Epigenetic Dynamics and Regulation of Plant Male Reproduction.International journal of molecular sciences · 2022
    Review
  11. Review
  12. Genome-wide in silico analysis of long intergenic non-coding RNAs from rice peduncles at the heading stage.Physiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. H2Bub1 RegulatesPlant physiology · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Hong CaoKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Xiaoying LiKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Zhi WangKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Meng DingKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Yongzhen SunKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Fengqin DongKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Fengying ChenKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Li'an LiuKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
James DoughtyKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Yong LiKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.).
Yong-Xiu LiuKey Laboratory of Plant Molecular Physiology (H.C., X.L., Z.W., M.D., Y.S., F.D., F.C., Y.-X.L.) and Beijing Botanical Garden (L.L.), Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China;University of Chinese Academy of Sciences, Beijing 100049, China (X.L., M.D.);Department of Biology and Biochemistry, University of Bath, Bath BA2 7AY, United Kingdom (J.D.); andDepartment of Internal Medicine IV, University of Hospital Freiburg, 79106 Freiburg, Germany (Y.L.) yongxiu@ibcas.ac.cn.
University of Chinese Academy of Sciences · CNBeijing Botanical Garden · CNUniversity Medical Center Freiburg · DEUniversity of Bath · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone H2B monoubiquitination (H2Bub1) is an important regulatory mechanism in eukaryotic gene transcription and is essential for normal plant development. However, the function of H2Bub1 in reproductive development remains elusive. Here, we report rice (Oryza sativa) HISTONE MONOUBIQUITINATION1 (OsHUB1) and OsHUB2, the homologs of Arabidopsis (Arabidopsis thaliana) HUB1 and HUB2 proteins, which function as E3 ligases in H2Bub1, are involved in late anther development in rice. oshub mutants exhibit abnormal tapetum development and aborted pollen in postmeiotic anthers. Knockout of OsHUB1 or OsHUB2 results in the loss of H2Bub1 and a reduction in the levels of dimethylated lysine-4 on histone 3 (H3K4me2). Anther transcriptome analysis revealed that several key tapetum degradation-related genes including OsC4, rice Cysteine Protease1 (OsCP1), and Undeveloped Tapetum1 (UDT1) were down-regulated in the mutants. Further, chromatin immunoprecipitation assays demonstrate that H2Bub1 directly targets OsC4, OsCP1, and UDT1 genes, and enrichment of H2Bub1 and H3K4me2 in the targets is consistent to some degree. Our studies suggest that histone H2B monoubiquitination, mediated by OsHUB1 and OsHUB2, is an important epigenetic modification that in concert with H3K4me2, modulates transcriptional regulation of anther development in rice.

Indexed as

Epigenesis, GeneticGene Expression Regulation, PlantHistone CodeArabidopsis ProteinsFlowersHistonesLysineMethylationModels, BiologicalMutationOryzaPhenotypePlant ProteinsSeedsUbiquitinationUbiquitin-Protein LigasesArabidopsis ProteinsHistonesHUB1 protein, ArabidopsisHUB2 protein, ArabidopsisLysinePlant ProteinsUbiquitin-Protein Ligases

Identifiers

PMID26143250
PMCPMC4528728
OpenAlexW2131597094

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.