Evidence map›Paper›PMID 26142280›Full record

ArticleEMBO reports2015

Phosphorylation of ubiquitin at Ser65 affects its polymerization, targets, and proteome-wide turnover.

Danielle L Swaney, Ricard A Rodríguez-Mias, Judit Villén

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 46 papers.

0numbers the graph read from it
0cells of the map it votes in
46citing papers in PubMed
5.0field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

46 citing papers in PubMed, 89 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Review
  8. Review
  9. Article
  10. Reading and Writing the Ubiquitin Code Using Genetic Code Expansion.Chembiochem : a European journal of chemical biology · 2024
    Review
  11. Article
  12. Decoding Ubiquitin Modifications by Mass Spectrometry.Advances in experimental medicine and biology · 2024
    Review
  13. TheActa biochimica et biophysica Sinica · 2023
    Article
  14. An expanded lexicon for the ubiquitin code.Nature reviews. Molecular cell biology · 2023
    Review
  15. Exercise during weight loss improves hepatic mitophagy.Sports medicine and health science · 2022
    Article
  16. Review
  17. Review
  18. Review
  19. Emerging Roles of Non-proteolytic Ubiquitination in Tumorigenesis.Frontiers in cell and developmental biology · 2022
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Danielle L SwaneyDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Ricard A Rodríguez-MiasDepartment of Genome Sciences, University of Washington, Seattle, WA, USA.
Judit VillénDepartment of Genome Sciences, University of Washington, Seattle, WA, USA jvillen@u.washington.edu.
University of Washington · US

Funding

Proteome-wide study of signaling networks in cancer by mass spectrometryR00CA140789 · NCI · UNIVERSITY OF WASHINGTON · PI VILLEN, JUDIT · 2010 to 2012
$732k
NCI NIH HHS R00 CA140789NCI NIH HHS R00CA140789
6 · The paper itself

Abstract

Ubiquitylation is an essential post-translational modification that regulates numerous cellular processes, most notably protein degradation. Ubiquitin can itself be phosphorylated at nearly every serine, threonine, and tyrosine residue. However, the effect of this modification on ubiquitin function is largely unknown. Here, we characterized the effects of phosphorylation of yeast ubiquitin at serine 65 in vivo and in vitro. We find this post-translational modification to be regulated under oxidative stress, occurring concomitantly with the restructuring of the ubiquitin landscape into a highly polymeric state. Phosphomimetic mutation of S65 recapitulates the oxidative stress phenotype, causing a dramatic accumulation of ubiquitylated proteins and a proteome-wide reduction of protein turnover rates. Importantly, this mutation impacts ubiquitin chain disassembly, chain linkage distribution, ubiquitin interactions, and substrate targeting. These results demonstrate that phosphorylation is an additional mode of ubiquitin regulation with broad implications in cellular physiology.

Indexed as

Cell SurvivalMass SpectrometryMutationOxidative StressPhosphorylationPolymerizationProtein Interaction Domains and MotifsProtein Processing, Post-TranslationalProteomeProteomicsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsStress, PhysiologicalUbiquitinUbiquitinationProteomeSaccharomyces cerevisiae ProteinsUbiquitinoxidative stressphosphorylationprotein turnoverproteomicsubiquitin

Identifiers

PMID26142280
PMCPMC4576982
OpenAlexW2117105941

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.