Evidence map›Paper›PMID 26142112›Full record

ArticleMedical & biological engineering & computing2015

Volumetric quantitative characterization of human patellar cartilage with topological and geometrical features on phase-contrast X-ray computed tomography.

Mahesh B Nagarajan, Paola Coan, Markus B Huber, Paul C Diemoz, Axel Wismüller

Abstract read
In one paragraph

Article in Medical & biological engineering & computing, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact, top 86% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 2 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 3 countries.

Mahesh B NagarajanDepartments of Imaging Sciences and Biomedical Engineering, University of Rochester, Rochester, NY, USA. mbnagaraj@gmail.com.
Paola CoanFaculty of Medicine & Institute of Clinical Radiology, Ludwig Maximilians University, 80336, Munich, Germany.
Markus B HuberDepartments of Imaging Sciences and Biomedical Engineering, University of Rochester, Rochester, NY, USA.
Paul C DiemozDepartment of Physics, Ludwig Maximilians University, 85748, Munich, Germany.
Axel WismüllerDepartments of Imaging Sciences and Biomedical Engineering, University of Rochester, Rochester, NY, USA.
Ludwig-Maximilians-Universität München · DEUniversity of Rochester · USEuropean Synchrotron Radiation Facility · FR

Funding

CRCNS: Large Scale Brain Connectivity in HIV-Related Cognitive ImpairmentR01DA034977 · NIDA · UNIVERSITY OF ROCHESTER · PI WISMUELLER, AXEL W.E. · 2012 to 2014
$599k
NIDA NIH HHS R01 DA034977NIDA NIH HHS R01-DA-034977
6 · The paper itself

Abstract

Phase-contrast X-ray computed tomography (PCI-CT) has attracted significant interest in recent years for its ability to provide significantly improved image contrast in low absorbing materials such as soft biological tissue. In the research context of cartilage imaging, previous studies have demonstrated the ability of PCI-CT to visualize structural details of human patellar cartilage matrix and capture changes to chondrocyte organization induced by osteoarthritis. This study evaluates the use of geometrical and topological features for volumetric characterization of such chondrocyte patterns in the presence (or absence) of osteoarthritic damage. Geometrical features derived from the scaling index method (SIM) and topological features derived from Minkowski Functionals were extracted from 1392 volumes of interest (VOI) annotated on PCI-CT images of ex vivo human patellar cartilage specimens. These features were subsequently used in a machine learning task with support vector regression to classify VOIs as healthy or osteoarthritic; classification performance was evaluated using the area under the receiver operating characteristic curve (AUC). Our results show that the classification performance of SIM-derived geometrical features (AUC: 0.90 ± 0.09) is significantly better than Minkowski Functionals volume (AUC: 0.54 ± 0.02), surface (AUC: 0.72 ± 0.06), mean breadth (AUC: 0.74 ± 0.06) and Euler characteristic (AUC: 0.78 ± 0.04) (p < 10(-4)). These results suggest that such geometrical features can provide a detailed characterization of the chondrocyte organization in the cartilage matrix in an automated manner, while also enabling classification of cartilage as healthy or osteoarthritic with high accuracy. Such features could potentially serve as diagnostic imaging markers for evaluating osteoarthritis progression and its response to different therapeutic intervention strategies.

Indexed as

HumansImaging, Three-DimensionalOsteoarthritis, KneeRadiographic Image Interpretation, Computer-AssistedTomography, X-Ray ComputedMinkowski functionalsOsteoarthritisPhase-contrast imagingScaling index methodSupport vector regressionVolumetric features

Identifiers

PMID26142112
PMCPMC4630098
OpenAlexW2139823635

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.