Evidence map›Paper›PMID 26141566›Full record

ArticleMolecular genetics and genomics : MGG2016

Genetic analysis of durable resistance to Magnaporthe oryzae in the rice accession Gigante Vercelli identified two blast resistance loci.

Simona Urso, Francesca Desiderio, Chiara Biselli, Paolo Bagnaresi, Laura Crispino, Pietro Piffanelli, Pamela Abbruscato, Federica Assenza, Giada Guarnieri, Luigi Cattivelli and 1 more

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Article in Molecular genetics and genomics : MGG, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 1 synthesis or guideline pooled it.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Simona UrsoCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Francesca DesiderioCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Chiara BiselliCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Paolo BagnaresiCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Laura CrispinoRice Genomics Group, Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy.
Pietro PiffanelliRice Genomics Group, Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy.
Pamela AbbruscatoRice Genomics Group, Parco Tecnologico Padano, Via Einstein, 26900, Lodi, Italy.
Federica AssenzaCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Giada GuarnieriCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Luigi CattivelliCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy.
Giampiero ValèCouncil for Agricultural Research and Economics (CRA), Genomics Research Centre, Via S. Protaso, 302, 29017, Fiorenzuola d'Arda, Piacenza, Italy. giampiero.vale@entecra.it.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Rice cultivars exhibiting durable resistance to blast, the most important rice fungal disease provoking up to 30 % of rice losses, are very rare and searching for sources of such a resistance represents a priority for rice-breeding programs. To this aim we analyzed Gigante Vercelli (GV) and Vialone Nano (VN), two temperate japonica rice cultivars in Italy displaying contrasting response to blast, with GV showing a durable and broad-spectrum resistance, whereas VN being highly susceptible. An SSR-based genetic map developed using a GV × VN population segregating for blast resistance identified two blast resistance loci, localized to the long arm of chromosomes 1 and 4 explaining more than 78 % of the observed phenotypic variation for blast resistance. The pyramiding of two blast resistance QTLs was therefore involved in the observed durable resistance in GV. Mapping data were integrated with information obtained from RNA-seq expression profiling of all classes of resistance protein genes (resistance gene analogs, RGAs) and with the map position of known cloned or mapped blast resistance genes to search candidates for the GV resistant response. A co-localization of RGAs with the LOD peak or the marker interval of the chromosome 1 QTL was highlighted and a valuable tool for selecting the resistance gene during breeding programs was developed. Comparative analysis with known blast resistance genes revealed co-positional relationships between the chromosome 1 QTL with the Pi35/Pish blast resistance alleles and showed that the chromosome 4 QTL represents a newly identified blast resistance gene. The present genetic analysis has therefore allowed the identification of two blast resistance loci in the durable blast-resistant rice cultivar GV and tools for molecular selection of these resistance genes.

Indexed as

AllelesBreedingChromosome MappingDisease ResistanceGenetic TestingMagnaportheOryzaPlant DiseasesPlant ProteinsQuantitative Trait LociPlant ProteinsBlast diseaseCandidate genesDurable resistanceGenetic mappingNB-LRRRiceRNA-seq

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.