Evidence map›Paper›PMID 26140593›Full record

ArticleCell2015

A Dynamic Search Process Underlies MicroRNA Targeting.

Stanley D Chandradoss, Nicole T Schirle, Malwina Szczepaniak, Ian J MacRae, Chirlmin Joo

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 159 papers.

0numbers the graph read from it
0cells of the map it votes in
159citing papers in PubMed
15.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

159 citing papers in PubMed, 258 citations in OpenAlex.

  1. Article
  2. Exchange dynamics and kinetic control of gene regulation complexes.Nature reviews. Molecular cell biology · 2026
    Review
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  12. The Conundrum of XenomiRs and Human Health.Advances in nutrition (Bethesda, Md.) · 2025
    Review
  13. Review
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
  19. Out-of-Equilibrium ceRNA Crosstalk.Methods in molecular biology (Clifton, N.J.) · 2025
    Article
  20. Review

99 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Stanley D ChandradossKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Lorentzweg 1, 2628 CJ, Delft, The Netherlands.
Nicole T Schirle *Department of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd, La Jolla, CA 92037, USA.
Malwina Szczepaniak *Kavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Lorentzweg 1, 2628 CJ, Delft, The Netherlands.
Ian J MacRaeDepartment of Integrative Structural and Computational Biology, The Scripps Research Institute, 10550 N. Torrey Pines Rd, La Jolla, CA 92037, USA.
Chirlmin JooKavli Institute of NanoScience, Department of BioNanoScience, Delft University of Technology, Lorentzweg 1, 2628 CJ, Delft, The Netherlands.
Scripps Research Institute · US

Funding

Structural Basis for RNA Silencing by Human Argonaute2R01GM104475 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI MACRAE, IAN JOHN · 2013 to 2018
$2.2M
European Research Council 309509NIGMS NIH HHS R01 GM104475
6 · The paper itself

Abstract

Argonaute proteins play a central role in mediating post-transcriptional gene regulation by microRNAs (miRNAs). Argonautes use the nucleotide sequences in miRNAs as guides for identifying target messenger RNAs for repression. Here, we used single-molecule FRET to directly visualize how human Argonaute-2 (Ago2) searches for and identifies target sites in RNAs complementary to its miRNA guide. Our results suggest that Ago2 initially scans for target sites with complementarity to nucleotides 2-4 of the miRNA. This initial transient interaction propagates into a stable association when target complementarity extends to nucleotides 2-8. This stepwise recognition process is coupled to lateral diffusion of Ago2 along the target RNA, which promotes the target search by enhancing the retention of Ago2 on the RNA. The combined results reveal the mechanisms that Argonaute likely uses to efficiently identify miRNA target sites within the vast and dynamic agglomeration of RNA molecules in the living cell.

Indexed as

AnimalsArgonaute ProteinsBinding SitesDiffusionFluorescence Resonance Energy TransferHumansMiceMicroRNAsModels, BiologicalThermodynamicsAGO2 protein, humanArgonaute ProteinsMicroRNAs

Identifiers

PMID26140593
PMCPMC4768356
OpenAlexW1682697190

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.