Evidence map›Paper›PMID 26139845›Full record

ArticleG3 (Bethesda, Md.)2015

Whole-Exome Sequencing and Targeted Copy Number Analysis in Primary Ciliary Dyskinesia.

Christian R Marshall, Stephen W Scherer, Maimoona A Zariwala, Lynette Lau, Tara A Paton, Tracy Stockley, Rebekah K Jobling, Peter N Ray, Michael R Knowles, FORGE Canada Consortium and 3 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Guideline
  2. Pooled it
  3. Guideline
  4. Article
  5. Article
  6. Article
  7. Article
  8. Case report: novelFrontiers in genetics · 2026
    Article
  9. Review
  10. Article
  11. Opportunistic genomic screening has clinical utility: An interventional cohort study.Genetics in medicine : official journal of the American College of Medical Genetics · 2025
    Article
  12. Article
  13. Primary Ciliary Dyskinesia.Pediatrics · 2024
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Case Report:Frontiers in genetics · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Christian R MarshallDepartment of Pediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada The Centre for Applied Genomics, Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Stephen W SchererThe Centre for Applied Genomics, Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada Department of Molecular Genetics and the McLaughlin Centre, University of Toronto, Toronto, ON, Canada.
Maimoona A ZariwalaDepartment of Pathology and Laboratory Medicine, University of North Carolina School of Medicine, Chapel Hill, North Carolina.
Lynette LauDepartment of Pediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Tara A PatonThe Centre for Applied Genomics, Genetics and Genome Biology, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Tracy StockleyDepartment of Pediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Rebekah K JoblingDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Peter N RayDepartment of Pediatric Laboratory Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada.
Michael R KnowlesDepartment of Medicine, University of North Carolina School of Medicine, Chapel Hill, North Carolina.
FORGE Canada Consortium
David A HallDivision of Respirology, St. Michael's Hospital, Toronto, ON, M5B 1W8, Canada Department of Medicine, University of Toronto, Toronto, ON, Canada raymond.kim@utoronto.ca sharon.dell@sickkids.ca hallda@smh.ca.
Sharon D DellChild Health Evaluative Sciences, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada Division of Respiratory Medicine, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada Department of Pediatrics, University of Toronto, Toronto, ON, Canada raymond.kim@utoronto.ca sharon.dell@sickkids.ca hallda@smh.ca.
Raymond H KimDivision of Clinical and Metabolic Genetics, The Hospital for Sick Children, Toronto, ON, M5G 1X8, Canada Department of Medicine, University of Toronto, Toronto, ON, Canada Department of Pediatrics, University of Toronto, Toronto, ON, Canada raymond.kim@utoronto.ca sharon.dell@sickkids.ca hallda@smh.ca.

Funding

Longitudinal Characterization of Respiratory Tract Exacerbations and Treatment Responses in Primary Ciliary DyskinesiaU54HL096458 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DAVIS, STEPHANIE DUGGINS · 2009 to 2023
$20.0M
UNC Clinical and Translational Science AwardUL1TR000083 · NCATS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI RUNGE, MARSCHALL S. · 2012 to 2013
$11.6M
Pathogenesis of PCD Lung DiseaseR01HL071798 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI KNOWLES, MICHAEL R · 2004 to 2021
$7.2M
NCATS NIH HHS UL1 TR000083NHLBI NIH HHS 5R01HL071798NHLBI NIH HHS R01 HL071798NHLBI NIH HHS U54 HL096458NHLBI NIH HHS U54HL096458
6 · The paper itself

Abstract

Primary ciliary dyskinesia (PCD) is an autosomal-recessive disorder resulting from loss of normal ciliary function. Symptoms include neonatal respiratory distress, chronic sinusitis, bronchiectasis, situs inversus, and infertility. Clinical features may be subtle and highly variable, making the diagnosis of PCD challenging. The diagnosis can be confirmed with ciliary ultrastructure analysis and/or molecular genetic testing of 32 PCD-associated genes. However, because of this genetic heterogeneity, comprehensive molecular genetic testing is not considered the standard of care, and the most efficient molecular approach has yet to be elucidated. Here, we propose a cost-effective and time-efficient molecular genetic algorithm to solve cases of PCD. We conducted targeted copy number variation (CNV) analysis and/or whole-exome sequencing on 20 families (22 patients) from a subset of 45 families (52 patients) with a clinical diagnosis of PCD who did not have a molecular genetic diagnosis after Sanger sequencing of 12 PCD-associated genes. This combined molecular genetic approach led to the identification of 4 of 20 (20%) families with clinically significant CNVs and 7 of 20 (35%) families with biallelic pathogenic mutations in recently identified PCD genes, resulting in an increased molecular genetic diagnostic rate of 55% (11/20). In patients with a clinical diagnosis of PCD, whole-exome sequencing followed by targeted CNV analysis results in an overall molecular genetic yield of 76% (34/45).

Indexed as

DNA Copy Number VariationsAdolescentAdultAlgorithmsAxonemal DyneinsChildChild, PreschoolCiliary Motility DisordersCodon, NonsenseCytoskeletal ProteinsExomeFemaleFrameshift MutationGenome, HumanHigh-Throughput Nucleotide SequencingHumansAxonemal DyneinsCodon, NonsenseCytoskeletal ProteinsDNAAF3 protein, humanDNAAF4 protein, humanMicrotubule-Associated ProteinsNerve Tissue ProteinsNuclear Proteinscopy number variationdiagnostic testingprimary ciliary dyskinesiawhole-exome sequencing

Identifiers

PMID26139845
PMCPMC4528333

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.