Evidence map›Paper›PMID 26139570›Full record

ArticleAndrology2015

Rare double sex and mab-3-related transcription factor 1 regulatory variants in severe spermatogenic failure.

A C Lima, F Carvalho, J Gonçalves, S Fernandes, P I Marques, M Sousa, A Barros, S Seixas, A Amorim, D F Conrad and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Andrology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed, 1 pooled it
1.2field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 1 synthesis or guideline pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Familial DMRT1-related non-obstructive azoospermia: a case report.Journal of assisted reproduction and genetics · 2024
    Article
  6. Article
  7. Review
  8. Review
  9. Article
  10. Review
  11. Disorders of spermatogenesis: Perspectives for novel genetic diagnostics after 20 years of unchanged routine.Medizinische Genetik : Mitteilungsblatt des Berufsverbandes Medizinische Genetik e.V · 2018
    Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 2 countries.

A C LimaGraduate Program in Areas of Basic and Applied Biology (GABBA), Abel Salazar Institute of Biomedical Sciences, University of Porto, Porto, Portugal.
F CarvalhoDepartment of Genetics, Faculty of Medicine of the University of Porto, Porto, Portugal.
J GonçalvesDepartment of Human Genetics, National Institute of Health Dr. Ricardo Jorge, Lisboa, Portugal.
S FernandesDepartment of Genetics, Faculty of Medicine of the University of Porto, Porto, Portugal.ORCID http://orcid.org/0000-0003-1128-833X
P I MarquesInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
M SousaLaboratory of Cell Biology, UMIB, ICBAS, University of Porto, Porto, Portugal.
A BarrosDepartment of Genetics, Faculty of Medicine of the University of Porto, Porto, Portugal.
S SeixasInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
A AmorimInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
D F ConradDepartment of Genetics, Washington University School of Medicine, St. Louis, MO, USA.
A M LopesInstituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.
Universidade do Porto · PTNational Institute of Health Dr. Ricardo Jorge · PTWashington University in St. Louis · US

Funding

GENOMICS OF SPERMATOGENIC IMPAIRMENTR01HD078641 · NICHD · WASHINGTON UNIVERSITY · PI Kenneth Ivan Aston, DONALD F. CONRAD · 2014 to 2026
$6.3M
MODELING THE EFFECTS OF STRUCTURAL VARIATION IN GTEX DATA AND MENDELIAN DISEASER01MH101810 · NIMH · WASHINGTON UNIVERSITY · PI CONRAD, DONALD F. · 2013 to 2016
$1.3M
NICHD NIH HHS R01 HD078641NICHD NIH HHS R01HD078641NIMH NIH HHS R01 MH101810
6 · The paper itself

Abstract

The double sex and mab-3-related transcription factor 1 (DMRT1) gene has long been linked to sex-determining pathways across vertebrates and is known to play an essential role in gonadal development and maintenance of spermatogenesis in mice. In humans, the genomic region harboring the DMRT gene cluster has been implicated in disorders of sex development and recently DMRT1 deletions were shown to be associated with non-obstructive azoospermia (NOA). In this work, we have employed different methods to screen a cohort of Portuguese NOA patients for DMRT1 exonic insertions and deletions [by multiplex ligation probe assay (MLPA); n = 68] and point mutations (by Sanger sequencing; n = 155). We have found three novel patient-specific non-coding variants in heterozygosity that were absent from 357 geographically matched controls. One of these is a complex variant with a putative regulatory role (c.-223_-219CGAAA>T), located in the promoter region within a conserved sequence involved in Dmrt1 repression. Moreover, while DMRT1 domains are highly conserved across vertebrates and show reduced levels of diversity in human populations, two rare synonymous substitutions (rs376518776 and rs34946058) and two rare non-coding variants that potentially affect DMRT1 expression and splicing (rs144122237 and rs200423545) were overrepresented in patients when compared with 376 Portuguese controls (301 fertile and 75 normozoospermic). Overall our previous and present results suggest a role of changes in DMRT1 dosage in NOA potentially also through a process of gene misregulation, even though DMRT1 deleterious variants seem to be rare.

Indexed as

AzoospermiaBase SequenceGene DeletionGene DosageGenotypeHumansMaleMolecular Sequence DataPortugalPromoter Regions, GeneticSequence AlignmentSpermatogenesisTranscription FactorsDMRT1 proteinTranscription Factorsalternative splicingcis-regulatory variantsdouble sex and mab-3-related transcription factor 1double sex and mab-3-related transcription factor 1 promoternon-obstructive azoospermia

Identifiers

PMID26139570
PMCPMC4802187
OpenAlexW1506336483

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.