Evidence map›Paper›PMID 26136570›Full record

ArticleJournal of virology2015

Exploring the Balance between DNA Pressure and Capsid Stability in Herpesviruses and Phages.

D W Bauer, D Li, J Huffman, F L Homa, K Wilson, J C Leavitt, S R Casjens, J Baines, A Evilevitch

Open access · bronzeAbstract read
In one paragraph

Article in Journal of virology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
6.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Mysteries of adenovirus packaging.Journal of virology · 2025
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Mechanical Properties of Viruses.Sub-cellular biochemistry · 2024
    Review
  15. Integrative Approaches to Study Virus Structures.Sub-cellular biochemistry · 2024
    Review
  16. Temperature-induced DNA density transition in phage λ capsid revealed with contrast-matching SANS.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  17. Article
  18. Article
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 2 countries.

D W BauerCarnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA.
D LiCarnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA.
J HuffmanDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
F L HomaDepartment of Microbiology and Molecular Genetics, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania, USA.
K WilsonUniversity of Utah School of Medicine, Department of Pathology, Salt Lake City, Utah, USA.
J C LeavittUniversity of Utah School of Medicine, Department of Pathology, Salt Lake City, Utah, USA.
S R CasjensUniversity of Utah School of Medicine, Department of Pathology, Salt Lake City, Utah, USA.
J BainesDepartment of Microbiology and Immunology, New York State College of Veterinary Medicine, Cornell University, Ithaca, New York, USA.
A EvilevitchCarnegie Mellon University, Department of Physics, Pittsburgh, Pennsylvania, USA Lund University, Department of Biochemistry and Structural Biology, Lund, Sweden alexe@cmu.edu.
University of Utah · USCarnegie Mellon University · USUniversity of Pittsburgh · USLund University · SENew York State College of Veterinary Medicine · US

Funding

Nucleocapsid Envelopment Herpes Simplex Virus-1R01AI052341 · NIAID · LOUISIANA STATE UNIV A&M COL BATON ROUGE · PI BAINES, JOEL D. · 2003 to 2013
$3.6M
DNA packaging and delivery by dsDNA virusesR01AI074825 · NIAID · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2008 to 2012
$1.8M
Herpes Simplex Virus Capsid Assembly and DNA PackagingR01AI060836 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMA, FREDERICK L · 2006 to 2010
$1.6M
Training in the Molecular Biophysics and Structural BiologyT32GM088119 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HINCK, ANDREW P · 2011 to 2020
$1.6M
DNA packaging and delivery by dsDNA virusesR01GM114817 · NIGMS · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2014 to 2017
$1.5M
Herpes Simples Virus Capsid Assembly and DNA PackagingR56AI060836 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI HOMA, FREDERICK L · 2011 to 2011
$379k
DNA packaging and delivery by dsDNA virusesR56AI074825 · NIAID · UNIVERSITY OF UTAH · PI CASJENS, SHERWOOD R. · 2007 to 2007
$374k
NIAID NIH HHS AI060836NIAID NIH HHS AI074825NIAID NIH HHS AI52341NIAID NIH HHS R01 AI052341NIAID NIH HHS R01 AI060836NIAID NIH HHS R01 AI074825NIAID NIH HHS R56 AI060836NIAID NIH HHS R56 AI074825NIGMS NIH HHS R01 GM114817NIGMS NIH HHS T32 GM088119
6 · The paper itself

Abstract

unlabelledWe have recently shown in both herpesviruses and phages that packaged viral DNA creates a pressure of tens of atmospheres pushing against the interior capsid wall. For the first time, using differential scanning microcalorimetry, we directly measured the energy powering the release of pressurized DNA from the capsid. Furthermore, using a new calorimetric assay to accurately determine the temperature inducing DNA release, we found a direct influence of internal DNA pressure on the stability of the viral particle. We show that the balance of forces between the DNA pressure and capsid strength, required for DNA retention between rounds of infection, is conserved between evolutionarily diverse bacterial viruses (phages λ and P22), as well as a eukaryotic virus, human herpes simplex 1 (HSV-1). Our data also suggest that the portal vertex in these viruses is the weakest point in the overall capsid structure and presents the Achilles heel of the virus's stability. Comparison between these viral systems shows that viruses with higher DNA packing density (resulting in higher capsid pressure) have inherently stronger capsid structures, preventing spontaneous genome release prior to infection. This force balance is of key importance for viral survival and replication. Investigating the ways to disrupt this balance can lead to development of new mutation-resistant antivirals. IMPORTANCE: A virus can generally be described as a nucleic acid genome contained within a protective protein shell, called the capsid. For many double-stranded DNA viruses, confinement of the large DNA molecule within the small protein capsid results in an energetically stressed DNA state exerting tens of atmospheres of pressures on the inner capsid wall. We show that stability of viral particles (which directly relates to infectivity) is strongly influenced by the state of the packaged genome. Using scanning calorimetry on a bacterial virus (phage λ) as an experimental model system, we investigated the thermodynamics of genome release associated with destabilizing the viral particle. Furthermore, we compare the influence of tight genome confinement on the relative stability for diverse bacterial and eukaryotic viruses. These comparisons reveal an evolutionarily conserved force balance between the capsid stability and the density of the packaged genome.

Indexed as

Bacteriophage lambdaBacteriophage P22CapsidDNA, ViralHerpesvirus 1, HumanHumansPressureSalmonella entericaVirus AssemblyDNA, Viral

Identifiers

PMID26136570
PMCPMC4542358
OpenAlexW1963252475

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.