Evidence map›Paper›PMID 26136270›Full record

ArticleJournal of experimental botany2015

Antagonistic peptide technology for functional dissection of CLE peptides revisited.

Nathan Czyzewicz, Mari Wildhagen, Pietro Cattaneo, Yvonne Stahl, Karine Gustavo Pinto, Reidunn B Aalen, Melinka A Butenko, Rüdiger Simon, Christian S Hardtke, Ive De Smet

Abstract read
In one paragraph

Article in Journal of experimental botany, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. WOX going on: CLE peptides in plant development.Current opinion in plant biology · 2021
    Review
  11. Article
  12. Review
  13. Article
  14. Review
  15. Peptides take centre stage in plant signaling. Preface.Journal of experimental botany · 2015
    Article
  16. Article
  17. Article
  18. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nathan CzyzewiczDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, UK.
Mari WildhagenDepartment of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway.
Pietro CattaneoDepartment of Plant Molecular Biology, University of Lausanne, CH-1015, Lausanne, Switzerland.
Yvonne StahlInstitute for Developmental Genetics, Heinrich-Heine University, D-40225 Düsseldorf, Germany.
Karine Gustavo PintoInstitute for Developmental Genetics, Heinrich-Heine University, D-40225 Düsseldorf, Germany.
Reidunn B AalenDepartment of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway.
Melinka A ButenkoDepartment of Biosciences, Section for Genetics and Evolutionary Biology, University of Oslo, N-0316 Oslo, Norway.
Rüdiger SimonInstitute for Developmental Genetics, Heinrich-Heine University, D-40225 Düsseldorf, Germany.
Christian S HardtkeDepartment of Plant Molecular Biology, University of Lausanne, CH-1015, Lausanne, Switzerland.
Ive De SmetDivision of Plant and Crop Sciences, School of Biosciences, University of Nottingham, Loughborough LE12 5RD, UK Centre for Plant Integrative Biology, University of Nottingham, Loughborough LE12 5RD, UK Department of Plant Systems Biology, VIB, B-9052 Ghent, Belgium Department of Plant Biotechnology and Genetics, Ghent University, B-9052 Ghent, Belgium ive.desmet@psb.vib-ugent.be.

Funding

Biotechnology and Biological Sciences Research Council BB/H022457/1
6 · The paper itself

Abstract

In the Arabidopsis thaliana genome, over 1000 putative genes encoding small, presumably secreted, signalling peptides can be recognized. However, a major obstacle in identifying the function of genes encoding small signalling peptides is the limited number of available loss-of-function mutants. To overcome this, a promising new tool, antagonistic peptide technology, was recently developed. Here, this antagonistic peptide technology was tested on selected CLE peptides and the related IDA peptide and its usefulness in the context of studies of peptide function discussed. Based on the analyses, it was concluded that the antagonistic peptide approach is not the ultimate means to overcome redundancy or lack of loss-of-function lines. However, information collected using antagonistic peptide approaches (in the broad sense) can be very useful, but these approaches do not work in all cases and require a deep insight on the interaction between the ligand and its receptor to be successful. This, as well as peptide ligand structure considerations, should be taken into account before ordering a wide range of synthetic peptide variants and/or generating transgenic plants.

Indexed as

Gene Expression Regulation, PlantAmino Acid SequenceArabidopsisArabidopsis ProteinsMagnetic Resonance SpectroscopyPeptidesSequence AlignmentArabidopsis ProteinsPeptidesCLEIDApeptide structurepeptide variantsrootsmall signalling peptides.

Identifiers

PMID26136270
PMCPMC4526918

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.