Evidence map›Paper›PMID 26135327›Full record

ArticleJournal of acquired immune deficiency syndromes (1999)2015

Pooled Nucleic Acid Testing to Detect Antiretroviral Treatment Failure in HIV-Infected Patients in Mozambique.

Myres Tilghman, Daniel Tsai, Titos P Buene, Manuel Tomas, Salma Amade, Daniel Gehlbach, Stephanie Chang, Caroline Ignacio, Gemma Caballero, Stephen Espitia and 3 more

Open access · greenAbstract read
In one paragraph

Article in Journal of acquired immune deficiency syndromes (1999), 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 1 synthesis or guideline pooled it, 12 citations in OpenAlex.

  1. Pooled it
  2. Trial
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Interferon-γ-Inducible Protein 10 (IP-10) as a Screening Tool to Optimize Human Immunodeficiency Virus RNA Monitoring in Resource-Limited Settings.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2017
    Article
  9. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 2 countries.

Myres Tilghman*HIV, STD and Hepatitis Branch of Public Health Services, Health and Human Services, County of San Diego, San Diego, CA; †University of California, San Diego, La Jolla, CA; ‡Department of Microbiology, Universidade Eduardo Mondlane, Maputo, Mozambique; §Department of Biostatistics, University of Washington, Seattle, WA; and ‖Veterans Affairs San Diego Healthcare System, San Diego, CA.
Daniel Tsai
Titos P Buene
Manuel Tomas
Salma Amade
Daniel Gehlbach
Stephanie Chang
Caroline Ignacio
Gemma Caballero
Stephen Espitia
Susanne May
Emilia V Noormahomed
Davey M Smith
University of California, San Diego · USEduardo Mondlane University · MZUniversity of Washington · US

Funding

VirologyP30AI036214 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Maile Ann Young Karris · 1994 to 2026
$78.4M
UCSD Department of Medicine HIV/AIDS Clinical Trials UnitUM1AI069432 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI TIMOTHY J. WILKIN · 2012 to 2026
$50.4M
STRUCTURAL NEUROIMAGING COREP30MH062512 · NIMH · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI Jessica Lynette Montoya · 2001 to 2026
$50.4M
UCSD Department of Medicine HIV/AIDS Clinical Trials UnitU01AI069432 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI BENSON, CONSTANCE ANN · 2007 to 2011
$19.3M
The Universidade Eduardo Mondlane/UCSD Medical Education PartnershipR24TW008908 · FIC · EDUARDO MONDLANE UNIVERSITY · PI NOORMAHOMED, EMILIA VIRGINIA · 2010 to 2015
$9.0M
The Universidade Eduardo Mondlane/UCSD Medical Education PartnershipR24TW008910 · FIC · EDUARDO MONDLANE UNIVERSITY · PI BICKLER, STEPHEN W, NOORMAHOMED, EMILIA VIRGINIA · 2010 to 2014
$2.0M
Mentoring Translational Research in HIVK24AI100665 · NIAID · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2012 to 2021
$1.5M
Combined Testing to Identify Virologic Failure and HIV-1 Drug ResistanceR03EB015365 · NIBIB · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SMITH, DAVID MITCHELL · 2014 to 2015
$233k
FIC NIH HHS R24 TW008908FIC NIH HHS R24TW008908FIC NIH HHS R24 TW008910FIC NIH HHS R24TW008910NIAID NIH HHS AI100665NIAID NIH HHS AI36214NIAID NIH HHS AI69432NIAID NIH HHS K24 AI100665NIAID NIH HHS P30 AI036214NIAID NIH HHS U01 AI069432NIAID NIH HHS UM1 AI069432NIBIB NIH HHS EB015365NIBIB NIH HHS R03 EB015365
6 · The paper itself

Abstract

backgroundIn resource-limited settings, viral load monitoring of HIV-infected patients receiving antiretroviral therapy (ART) is not readily available because of high costs. Here, we compared the accuracy and costs of quantitative and qualitative pooled methods with standard viral load testing.

methodsBlood was collected prospectively from 461 patients receiving first-line ART in Mozambique who had not been evaluated previously with viral load testing. Screening for virologic failure of ART was performed quantitatively (ie, standard viral loads) and qualitatively [one and 2 rounds of polymerase chain reaction (PCR)]. Individual samples and minipools of 5 samples were then analyzed using both methods. The relative efficiency, accuracy, and costs of each method were calculated based on viral load thresholds for ART failure.

resultsStandard viral load testing of individual samples revealed a high rate of ART failure (19%-23%) across all virologic failure thresholds, and the majority of the patients (93%) with viral loads >1500 copies per milliliter had genotypic resistance to drugs in their ART regimen. Pooled quantitative screening and deconvolution testing had positive and negative predictive values exceeding 95% with cost savings of $11,250 compared with quantitative testing of each sample individually. Pooled qualitative screening and deconvolution testing had a higher cost savings of $30,147 for 1 PCR round and $25,535 for 2 PCR rounds compared with quantitative testing each sample individually. Both pooled qualitative PCR methods had positive and negative predictive values ≥90%, but the pooled 1-round PCR method had a sensitivity of 64%.

conclusionsGiven the high rate of undiagnosed ART failure and drug resistance in this cohort, it is clear that virologic monitoring is urgently needed in this population. Here, we compared alternative methods of virologic monitoring with standard viral load testing of individual samples and found these methods to be cost saving and accurate. The test characteristics of each method will likely need to be considered for each local population before it is adopted.

Indexed as

Anti-HIV AgentsHIV InfectionsHumansMozambiquePolymerase Chain ReactionRNA, ViralTreatment FailureViral LoadAnti-HIV AgentsRNA, Viral

Identifiers

PMID26135327
PMCPMC4607635
OpenAlexW2417318835

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.