Evidence map›Paper›PMID 26134572›Full record

ArticleThe Journal of biological chemistry2015

The C-terminal Domain (CTD) of Human DNA Glycosylase NEIL1 Is Required for Forming BERosome Repair Complex with DNA Replication Proteins at the Replicating Genome: DOMINANT NEGATIVE FUNCTION OF THE CTD.

Pavana M Hegde, Arijit Dutta, Shiladitya Sengupta, Joy Mitra, Sanjay Adhikari, Alan E Tomkinson, Guo-Min Li, Istvan Boldogh, Tapas K Hazra, Sankar Mitra and 1 more

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
3.2field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 48 citations in OpenAlex.

  1. Review
  2. Review
  3. Research progress on the role of the NEIL family in cancer.Frontiers in cell and developmental biology · 2025
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Noncatalytic Domains in DNA Glycosylases.International journal of molecular sciences · 2022
    Review
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Ligand-induced gene activation is associated with oxidative genome damage whose repair is required for transcription.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  15. Review
  16. Article
  17. Article
  18. Article
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Pavana M HegdeDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030.
Arijit DuttaDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030; Departments of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555.
Shiladitya SenguptaDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030.
Joy MitraDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030.
Sanjay AdhikariDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030.
Alan E TomkinsonDepartment of Internal Medicine and University of New Mexico Cancer Center, University of New Mexico, Albuquerque, New Mexico 87131.
Guo-Min LiDepartment of Toxicology and Cancer Biology and Markey Cancer Center, University of Kentucky College of Medicine, Lexington, Kentucky 40536.
Istvan BoldoghDepartments of Microbiology and Immunology, University of Texas Medical Branch, Galveston, Texas 77555.
Tapas K HazraDepartments of Internal Medicine, University of Texas Medical Branch, Galveston, Texas 77555.
Sankar MitraDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030; Departments of Biochemistry and Molecular Biology, University of Texas Medical Branch, Galveston, Texas 77555; Weill Medical College of Cornell University, New York, New York. Electronic address: smitra2@houstonmethodist.org.
Muralidhar L HegdeDepartment of Radiation Oncology, Houston Methodist Research Institute, Houston, Texas 77030; Weill Medical College of Cornell University, New York, New York; Houston Methodist Neurological Institute, Houston, Texas 77030. Electronic address: mlhegde@houstonmethodist.org.
Houston Methodist · USThe University of Texas Medical Branch at Galveston · USMarkey Cancer Center · USUniversity of New Mexico · US

Funding

Transcription-Coupled & Replication-Associated Excision RepairP01CA092584 · NCI · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI John A. Tainer · 2001 to 2026
$89.6M
Virus, Tissue Culture and ImmunoassayP01AI062885 · NIAID · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI GAROFALO, ROBERTO P · 2005 to 2022
$23.9M
OXIDATIVE STRESS,REPAIR OF OXIDIZED GUANINES IN AGED CELLSP01AG021830 · NIA · UNIVERSITY OF TEXAS MEDICAL BR GALVESTON · PI PAPACONSTANTINOU, JOHN NMN · 2004 to 2010
$6.4M
ROLES OF DNA LIGASE I IN MAMMALIAN DNA METABOLISMR01GM057479 · NIGMS · UNIVERSITY OF TEXAS HLTH SCI CTR SAN ANT · PI TOMKINSON, ALAN E · 2000 to 2017
$3.7M
Preferential single-strand break repair in the active genes of mammalian cellsR01NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2012 to 2021
$3.3M
Etiological Linkage of DNA Damage/Repair Deficiency in Neurodegenerative DiseasesR01NS088645 · NINDS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI HEGDE, MURALIDHAR L · 2015 to 2019
$1.8M
"Repair Co-ordination of Radiation-Induced Clustered Damage In Mammalian Genomes"R01CA158910 · NCI · UNIVERSITY OF TEXAS MED BR GALVESTON · PI MITRA, SANKAR · 2012 to 2016
$1.6M
Novel Mechanism of Genome Instability in Colorectal CancerR01CA167181 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI GU, LIYA, LI, GUO-MIN · 2013 to 2017
$1.6M
Linkage of Lung Inflammation to 8-oxoguanine and OGG1R01ES018948 · NIEHS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI BOLDOGH, ISTVAN STEVEN · 2010 to 2014
$1.5M
Repair of Oxidative Genome Damage Associated with Gene ActivationR01GM105090 · NIGMS · METHODIST HOSPITAL RESEARCH INSTITUTE · PI MITRA, SANKAR · 2014 to 2017
$1.2M
DNA double strand break repair deficiency and neurodegenerationR56NS073976 · NINDS · UNIVERSITY OF TEXAS MED BR GALVESTON · PI HAZRA, TAPAS K · 2024 to 2024
$536k
NCI NIH HHS P01 CA092584NCI NIH HHS R01 CA158910NCI NIH HHS R01 CA167181NIAID NIH HHS P01 AI062885NIA NIH HHS P01 AG021830NIEHS NIH HHS R01 ES018948NIGMS NIH HHS R01 GM057479NIGMS NIH HHS R01 GM105090NIGMS NIH HHS R01 GM57479NINDS NIH HHS R01 NS073976NINDS NIH HHS R01 NS088645NINDS NIH HHS R56 NS073976
6 · The paper itself

Abstract

The human DNA glycosylase NEIL1 was recently demonstrated to initiate prereplicative base excision repair (BER) of oxidized bases in the replicating genome, thus preventing mutagenic replication. A significant fraction of NEIL1 in cells is present in large cellular complexes containing DNA replication and other repair proteins, as shown by gel filtration. However, how the interaction of NEIL1 affects its recruitment to the replication site for prereplicative repair was not investigated. Here, we show that NEIL1 binarily interacts with the proliferating cell nuclear antigen clamp loader replication factor C, DNA polymerase δ, and DNA ligase I in the absence of DNA via its non-conserved C-terminal domain (CTD); replication factor C interaction results in ∼8-fold stimulation of NEIL1 activity. Disruption of NEIL1 interactions within the BERosome complex, as observed for a NEIL1 deletion mutant (N311) lacking the CTD, not only inhibits complete BER in vitro but also prevents its chromatin association and reduced recruitment at replication foci in S phase cells. This suggests that the interaction of NEIL1 with replication and other BER proteins is required for efficient repair of the replicating genome. Consistently, the CTD polypeptide acts as a dominant negative inhibitor during in vitro repair, and its ectopic expression sensitizes human cells to reactive oxygen species. We conclude that multiple interactions among BER proteins lead to large complexes, which are critical for efficient BER in mammalian cells, and the CTD interaction could be targeted for enhancing drug/radiation sensitivity of tumor cells.

Indexed as

DNA RepairDNA ReplicationGenome, HumanBase SequenceDNA DamageDNA GlycosylasesDNA Ligase ATPDNA LigasesDNA Polymerase IIIEscherichia coliGene Expression RegulationHEK293 CellsHumansMolecular Sequence DataOxidative StressProtein Structure, TertiaryDNA GlycosylasesDNA Ligase ATPDNA LigasesDNA Polymerase IIILIG1 protein, humanNEIL1 protein, humanReactive Oxygen SpeciesRecombinant ProteinsReplication Protein Cbase excision repair (BER)BERosomeDNA damageDNA damage responseDNA polymeraseDNA replicationdominant negative inhibitionNEIL1 DNA glycosylaseprereplicative repair

Identifiers

PMID26134572
PMCPMC4543652
OpenAlexW1664863192

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.