Evidence map›Paper›PMID 26134422›Full record

ArticlePLoS genetics2015

Genome Wide Binding Site Analysis Reveals Transcriptional Coactivation of Cytokinin-Responsive Genes by DELLA Proteins.

Nora Marín-de la Rosa, Anne Pfeiffer, Kristine Hill, Antonella Locascio, Rishikesh P Bhalerao, Pal Miskolczi, Anne L Grønlund, Aakriti Wanchoo-Kohli, Stephen G Thomas, Malcolm J Bennett and 3 more

Abstract read
In one paragraph

Article in PLoS genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed.

  1. Towards an integrated molecular understanding of plant hormones.Journal of integrative plant biology · 2026
    Review
  2. Article
  3. Review
  4. INDETERMINATE DOMAIN-DELLA protein interactions orchestrate gibberellin-mediated cell elongation in wheat and barley.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Review
  15. DELLA proteins recruit the Mediator complex subunit MED15 to coactivate transcription in land plants.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  16. Review
  17. Review
  18. Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Nora Marín-de la RosaInstituto de Biología Molecular y Celular de Plantas (CSIC-Universidad Politécnica de Valencia), Valencia, Spain.
Anne PfeifferDepartment of Stem Cell Biology, Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany.
Kristine HillSchool of Biosciences and Centre for Plant Integrative Biology, University of Nottingham, Nottingham, United Kingdom.
Antonella LocascioInstituto de Biología Molecular y Celular de Plantas (CSIC-Universidad Politécnica de Valencia), Valencia, Spain.
Rishikesh P BhaleraoDepartment of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Sveriges Lantbruksuniversitet, Umeå, Sweden; College of Science, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Pal MiskolcziDepartment of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Sveriges Lantbruksuniversitet, Umeå, Sweden.
Anne L GrønlundRothamsted Research, Harpenden, Hertfordshire, United Kingdom.
Aakriti Wanchoo-KohliRothamsted Research, Harpenden, Hertfordshire, United Kingdom.
Stephen G ThomasRothamsted Research, Harpenden, Hertfordshire, United Kingdom.
Malcolm J BennettDepartment of Forest Genetics and Plant Physiology, Umeå Plant Science Centre, Sveriges Lantbruksuniversitet, Umeå, Sweden; College of Science, King Saud University, Riyadh, Kingdom of Saudi Arabia.
Jan U LohmannDepartment of Stem Cell Biology, Centre for Organismal Studies Heidelberg, Heidelberg University, Heidelberg, Germany.
Miguel A BlázquezInstituto de Biología Molecular y Celular de Plantas (CSIC-Universidad Politécnica de Valencia), Valencia, Spain.
David AlabadíInstituto de Biología Molecular y Celular de Plantas (CSIC-Universidad Politécnica de Valencia), Valencia, Spain.

Funding

Biotechnology and Biological Sciences Research Council BB/D522603/1Biotechnology and Biological Sciences Research Council BB/E006922/1Biotechnology and Biological Sciences Research Council BB/E022618/1Biotechnology and Biological Sciences Research Council BB/G023972/1
6 · The paper itself

Abstract

The ability of plants to provide a plastic response to environmental cues relies on the connectivity between signaling pathways. DELLA proteins act as hubs that relay environmental information to the multiple transcriptional circuits that control growth and development through physical interaction with transcription factors from different families. We have analyzed the presence of one DELLA protein at the Arabidopsis genome by chromatin immunoprecipitation coupled to large-scale sequencing and we find that it binds at the promoters of multiple genes. Enrichment analysis shows a strong preference for cis elements recognized by specific transcription factor families. In particular, we demonstrate that DELLA proteins are recruited by type-B ARABIDOPSIS RESPONSE REGULATORS (ARR) to the promoters of cytokinin-regulated genes, where they act as transcriptional co-activators. The biological relevance of this mechanism is underpinned by the necessity of simultaneous presence of DELLAs and ARRs to restrict root meristem growth and to promote photomorphogenesis.

Indexed as

ArabidopsisArabidopsis ProteinsBase SequenceBinding SitesChromatin ImmunoprecipitationCytokininsDNA-Binding ProteinsDNA, PlantGene Expression Regulation, PlantPlant DevelopmentPlant RootsPromoter Regions, GeneticRepressor ProteinsSequence Analysis, DNASignal TransductionTranscriptional ActivationArabidopsis ProteinsARR1 protein, ArabidopsisARR2 protein, ArabidopsisCytokininsDNA-Binding ProteinsDNA, PlantGAI protein, ArabidopsisRepressor ProteinsRGA protein, ArabidopsisTranscription Factors

Identifiers

PMID26134422
PMCPMC4489807

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.