Evidence map›Paper›PMID 26133981›Full record

ArticlePloS one2015

Lesion-Specific Immune Response in Granulomas of Patients with Pulmonary Tuberculosis: A Pilot Study.

Selvakumar Subbian, Liana Tsenova, Mi-Jeong Kim, Helen C Wainwright, Annalie Visser, Nirmalya Bandyopadhyay, Joel S Bader, Petros C Karakousis, Gabriele B Murrmann, Linda-Gail Bekker and 2 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 62 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
62citing papers in PubMed, 2 pooled it
4.7field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

62 citing papers in PubMed, 2 syntheses or guidelines pooled it, 96 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Therapeutic remodeling of the tuberculosis granuloma with 1-methyl-D-tryptophan enhances CD8Proceedings of the National Academy of Sciences of the United States of America · 2026
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  20. High and Low Levels ofInternational journal of molecular sciences · 2023
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2 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 9 institutions in 3 countries.

Selvakumar SubbianLaboratory of Mycobacterial Immunity and Pathogenesis, Public Health Research Institute (PHRI), Rutgers Biomedical and Health Sciences, Rutgers, The State University of New Jersey, Newark, New Jersey, United States of America.
Liana TsenovaLaboratory of Mycobacterial Immunity and Pathogenesis, Public Health Research Institute (PHRI), Rutgers Biomedical and Health Sciences, Rutgers, The State University of New Jersey, Newark, New Jersey, United States of America; Department of Biological Sciences, NYC College of Technology, Brooklyn, New York, United States of America.
Mi-Jeong KimDepartment of Immunobiology, Joslin Diabetes Center, Harvard Medical School, Boston, Massachusetts, United States of America.
Helen C WainwrightDivision of Anatomical Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Annalie VisserDivision of Anatomical Pathology, Faculty of Health Sciences, University of Cape Town, Cape Town, South Africa.
Nirmalya BandyopadhyayDepartment of Biomedical Engineering, High-Throughput Biology Center and Institute of Computational Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America.
Joel S BaderDepartment of Biomedical Engineering, High-Throughput Biology Center and Institute of Computational Medicine, Johns Hopkins University, Baltimore, Maryland, United States of America.
Petros C KarakousisCenter for Tuberculosis Research, Department of Medicine, Johns Hopkins University School of Medicine and Department of International Health, Johns Hopkins Bloomberg School of Public Health, Baltimore, Maryland, United States of America.
Gabriele B MurrmannDepartment of General and Thoracic Surgery, Medisch Centrum Leeuwarden, Leeuwarden, The Netherlands.
Linda-Gail BekkerThe Desmond Tutu HIV Centre, Institute of Infectious Disease and Molecular Medicine and Department of Medicine, University of Cape Town, Cape Town, South Africa.
David G RussellDepartment of Microbiology and Immunology, College of Veterinary Medicine, Cornell University, Ithaca, New York, United States of America.
Gilla KaplanBill and Melinda Gates Foundation, Seattle, Washington, United States of America.
University of Cape Town · ZAJohns Hopkins University · USBill & Melinda Gates Foundation · USCornell University · USHigh Throughput Biology (United States) · USJoslin Diabetes Center · USMedisch Centrum Leeuwarden · NLNew York City College of Technology · USRutgers, The State University of New Jersey · US

Funding

THE ROLE OF THE GRANULOMA IN M. TUBERCULOSIS INFECTIONSR01HL055936 · NHLBI · WASHINGTON UNIVERSITY · PI RUSSELL, DAVID G · 1995 to 2015
$5.4M
Host &Pathogen Determinants of M tuberculosis LatencyR01AI054338 · NIAID · UNIV OF MED/DENT OF NJ-NJ MEDICAL SCHOOL · PI KAPLAN, GILLA · 2002 to 2011
$5.0M
Environmental Cues and Responses in TuberculosisR01AI067027 · NIAID · CORNELL UNIVERSITY · PI RUSSELL, DAVID G · 2006 to 2015
$4.0M
NHLBI NIH HHS HL055936NHLBI NIH HHS R01 HL055936NIAID NIH HHS AI054338NIAID NIH HHS AI067027NIAID NIH HHS R01 AI054338NIAID NIH HHS R01 AI067027
6 · The paper itself

Abstract

The formation and maintenance of granulomas is central to the host response to Mycobacterium tuberculosis (Mtb) infection. It is widely accepted that the lungs of patients with tuberculosis (TB) usually contain multiple infection foci, and that the granulomas evolve and differentiate independently, resulting in considerable heterogeneity. Although gene expression profiles of human blood cells have been proposed as biomarkers of Mtb infection and/or active disease, the immune profiles of discrete lesion types has not been studied extensively. Using histology, immunopathology and genome-wide transcriptome analysis, we explored the immunological profile of human lung TB granulomas. We show that although the different granulomas share core similarities in their immunological/inflammatory characteristics, they also exhibit significant divergence. Despite similar numbers of CD68+ macrophages in the different lesions, the extent of immune reactivity, as determined by the density of CD3+ T cells in the macrophage rich areas, and the extent of fibrosis, shows considerable variation. Both quantitative and qualitative differences among significantly differentially expressed genes (SDEG) were noted in each of the lesion types studied. Further, network/pathway analysis of SDEG revealed differential regulation of inflammatory response, immune cell trafficking, and cell mediated immune response in the different lesions. Our data highlight the formidable challenges facing ongoing efforts to identify peripheral blood biomarkers due to the diversity of lesion types and complexity of local immune responses in the lung.

Indexed as

Cellular MicroenvironmentFibrosisGene Expression ProfilingGranuloma, Respiratory TractHumansInflammationInterleukin-7LungLymphocyte ActivationMacrophagesNecrosisPilot ProjectsReceptors, CalcitriolRNA, MessengerSignal TransductionSTAT1 Transcription FactorIL7 protein, humanInterleukin-7Receptors, CalcitriolRNA, MessengerSTAT1 protein, humanSTAT1 Transcription FactorVDR protein, human

Identifiers

PMID26133981
PMCPMC4489805
OpenAlexW1794809450

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.