Evidence map›Paper›PMID 26131905›Full record

ArticlePloS one2015

iTRAQ-Based Quantitative Proteomic Analysis of the Initiation of Head Regeneration in Planarians.

Xiaofang Geng, Gaiping Wang, Yanli Qin, Xiayan Zang, Pengfei Li, Zhi Geng, Deming Xue, Zimei Dong, Kexue Ma, Guangwen Chen and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

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  10. Integrative proteomics and transcriptomics identify novel invasive-related biomarkers of non-functioning pituitary adenomas.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2016
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Xiaofang GengState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China.
Gaiping WangState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Yanli QinState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Xiayan ZangState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Pengfei LiState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Zhi GengState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Deming XueCollege of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Zimei DongCollege of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Kexue MaCollege of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Guangwen ChenCollege of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Cunshuan XuState Key Laboratory Cultivation Base for Cell Differentiation Regulation, Henan Normal University, Xinxiang, Henan Province, China; Henan Engineering Laboratory for Bioengineering and Drug Development, Henan Normal University, Xinxiang, Henan Province, China; College of Life Science, Henan Normal University, Xinxiang, Henan Province, China.
Henan Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The planarian Dugesia japonica has amazing ability to regenerate a head from the anterior ends of the amputated stump with maintenance of the original anterior-posterior polarity. Although planarians present an attractive system for molecular investigation of regeneration and research has focused on clarifying the molecular mechanism of regeneration initiation in planarians at transcriptional level, but the initiation mechanism of planarian head regeneration (PHR) remains unclear at the protein level. Here, a global analysis of proteome dynamics during the early stage of PHR was performed using isobaric tags for relative and absolute quantitation (iTRAQ)-based quantitative proteomics strategy, and our data are available via ProteomeXchange with identifier PXD002100. The results showed that 162 proteins were differentially expressed at 2 h and 6 h following amputation. Furthermore, the analysis of expression patterns and functional enrichment of the differentially expressed proteins showed that proteins involved in muscle contraction, oxidation reduction and protein synthesis were up-regulated in the initiation of PHR. Moreover, ingenuity pathway analysis showed that predominant signaling pathways such as ILK, calcium, EIF2 and mTOR signaling which were associated with cell migration, cell proliferation and protein synthesis were likely to be involved in the initiation of PHR. The results for the first time demonstrated that muscle contraction and ILK signaling might played important roles in the initiation of PHR at the global protein level. The findings of this research provide a molecular basis for further unraveling the mechanism of head regeneration initiation in planarians.

Indexed as

Genes, HelminthAnimalsChromatography, LiquidGene Expression ProfilingGene Expression RegulationHeadHelminth ProteinsPeptidesPlanariansPluripotent Stem CellsProtein Serine-Threonine KinasesProteomicsRandom AllocationReal-Time Polymerase Chain ReactionRegenerationSignal TransductionHelminth ProteinsPeptidesProtein Serine-Threonine Kinases

Identifiers

PMID26131905
PMCPMC4488856
OpenAlexW758436661

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.